miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 34951 0.71 0.369978
Target:  5'- uUGCUGgccggcggaGGCGCCUC--ACaGGAAGCCg -3'
miRNA:   3'- -ACGACg--------CUGCGGAGcuUGaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 5129 0.74 0.254796
Target:  5'- gGCgaagGCuACGCC-CGAAgaGGAGGCCg -3'
miRNA:   3'- aCGa---CGcUGCGGaGCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20346 0.67 0.580827
Target:  5'- gGCcaCGGCGCCUC-AGCgcgGGAgcGGCCg -3'
miRNA:   3'- aCGacGCUGCGGAGcUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 28627 0.72 0.296953
Target:  5'- cUGCUGCGGCcgGCCuuUCGAuaccccuucCUGGAGGCg -3'
miRNA:   3'- -ACGACGCUG--CGG--AGCUu--------GACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 27718 0.72 0.319985
Target:  5'- cGCUGUcGCGCCUCGuuGCUGGcgAGGUg -3'
miRNA:   3'- aCGACGcUGCGGAGCu-UGACC--UUCGg -5'
11520 5' -55.8 NC_003085.1 + 41753 0.7 0.415539
Target:  5'- cUGCUcgGACGCC-CGGccagcCUGGAAGCCc -3'
miRNA:   3'- -ACGAcgCUGCGGaGCUu----GACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 12146 0.7 0.425056
Target:  5'- gGCUGUGGgaaguCGCUgCGAGuCUGGAguGGCCg -3'
miRNA:   3'- aCGACGCU-----GCGGaGCUU-GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 15760 0.66 0.673621
Target:  5'- cGCUGCaaucGAgGCgUUUGAGCgcgucaacgcguuucUGGAGGCCa -3'
miRNA:   3'- aCGACG----CUgCG-GAGCUUG---------------ACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 21488 0.67 0.569876
Target:  5'- cUGC-GCGGCGUggUGGACUGGuuccccuugGAGCCc -3'
miRNA:   3'- -ACGaCGCUGCGgaGCUUGACC---------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 47952 0.67 0.569876
Target:  5'- gGCUGCcucuUGCC-CGAGCgccGGAcgGGCCg -3'
miRNA:   3'- aCGACGcu--GCGGaGCUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41078 0.67 0.57973
Target:  5'- gGCUGCcgaugagcgagcgGACuGCCUaccUGGACUGGGuggaGGCCc -3'
miRNA:   3'- aCGACG-------------CUG-CGGA---GCUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39509 0.67 0.580827
Target:  5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 14207 0.68 0.537363
Target:  5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3'
miRNA:   3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 12189 0.68 0.501327
Target:  5'- gGUggGCGACGUCgagcgcuucccggCGAACUGGAAGg- -3'
miRNA:   3'- aCGa-CGCUGCGGa------------GCUUGACCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 18061 0.68 0.495076
Target:  5'- gUGgaGguaGACGCCUCGGACaagcggcagUGGGAGUUg -3'
miRNA:   3'- -ACgaCg--CUGCGGAGCUUG---------ACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 44253 0.68 0.516045
Target:  5'- gGCcGCGuCGCgCUCGGACUcGGccuGCCu -3'
miRNA:   3'- aCGaCGCuGCG-GAGCUUGA-CCuu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 10746 0.7 0.434702
Target:  5'- uUGCUGUccggccacacgGGCGCCggGAagacGCUGGggGCa -3'
miRNA:   3'- -ACGACG-----------CUGCGGagCU----UGACCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 10491 0.66 0.658182
Target:  5'- cUGCUGCGcgGCGCaCUgGAGaauccgcGGAAGCg -3'
miRNA:   3'- -ACGACGC--UGCG-GAgCUUga-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 24626 0.66 0.658182
Target:  5'- gUGCUGCaGCGCUUCaccucGGCggaGGAGGCg -3'
miRNA:   3'- -ACGACGcUGCGGAGc----UUGa--CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 41408 0.66 0.658182
Target:  5'- gUGUUGuCGGaGCCUCGGGC-GGcaacAGCCa -3'
miRNA:   3'- -ACGAC-GCUgCGGAGCUUGaCCu---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.