miRNA display CGI


Results 61 - 80 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 14966 0.73 0.27523
Target:  5'- cGCUGCGGCccaCCUcCGGgagGCUGGAcauGGCCu -3'
miRNA:   3'- aCGACGCUGc--GGA-GCU---UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 12189 0.68 0.501327
Target:  5'- gGUggGCGACGUCgagcgcuucccggCGAACUGGAAGg- -3'
miRNA:   3'- aCGa-CGCUGCGGa------------GCUUGACCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 44253 0.68 0.516045
Target:  5'- gGCcGCGuCGCgCUCGGACUcGGccuGCCu -3'
miRNA:   3'- aCGaCGCuGCG-GAGCUUGA-CCuu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 14207 0.68 0.537363
Target:  5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3'
miRNA:   3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 7385 0.66 0.658182
Target:  5'- gGCcGaCGGCGCCcgcgUGAACUGGcacGAGUCc -3'
miRNA:   3'- aCGaC-GCUGCGGa---GCUUGACC---UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3220 0.66 0.647123
Target:  5'- cGCaagGCGAUGCCggCGcuacCUGGGccGGCCc -3'
miRNA:   3'- aCGa--CGCUGCGGa-GCuu--GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 11307 0.66 0.647123
Target:  5'- cGC-GCuGGCGCUUguggacgaGGACUGGAAGUCc -3'
miRNA:   3'- aCGaCG-CUGCGGAg-------CUUGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 30489 0.66 0.63605
Target:  5'- ---cGCGACGCCU-GGACUcGAcgacAGCCa -3'
miRNA:   3'- acgaCGCUGCGGAgCUUGAcCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 13330 0.66 0.63605
Target:  5'- aGCUcgagaGCGACuGCCUgGGACUGacgggcGAGGCa -3'
miRNA:   3'- aCGA-----CGCUG-CGGAgCUUGAC------CUUCGg -5'
11520 5' -55.8 NC_003085.1 + 13915 0.66 0.624974
Target:  5'- gGCgUGCGcGCGUUUCGGACgGGgcGCg -3'
miRNA:   3'- aCG-ACGC-UGCGGAGCUUGaCCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 19950 0.67 0.60285
Target:  5'- cGCUGgUGACGgCUCcucaguGCUGGAgcaguuccuGGCCa -3'
miRNA:   3'- aCGAC-GCUGCgGAGcu----UGACCU---------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 40369 0.67 0.60285
Target:  5'- cUGCUGCccgcggcgcuGACGCCUCuGGCgcu-GGCCg -3'
miRNA:   3'- -ACGACG----------CUGCGGAGcUUGaccuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 26113 0.67 0.601746
Target:  5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3'
miRNA:   3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 42007 0.67 0.591821
Target:  5'- cUGCcccgGCGGCGUCggcaCGGACgaGGgcGCCu -3'
miRNA:   3'- -ACGa---CGCUGCGGa---GCUUGa-CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 20760 0.67 0.591821
Target:  5'- cUGCUGCccgGCUUCGGGCUGu--GCCg -3'
miRNA:   3'- -ACGACGcugCGGAGCUUGACcuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 39509 0.67 0.580827
Target:  5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41078 0.67 0.57973
Target:  5'- gGCUGCcgaugagcgagcgGACuGCCUaccUGGACUGGGuggaGGCCc -3'
miRNA:   3'- aCGACG-------------CUG-CGGA---GCUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 47952 0.67 0.569876
Target:  5'- gGCUGCcucuUGCC-CGAGCgccGGAcgGGCCg -3'
miRNA:   3'- aCGACGcu--GCGGaGCUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 21488 0.67 0.569876
Target:  5'- cUGC-GCGGCGUggUGGACUGGuuccccuugGAGCCc -3'
miRNA:   3'- -ACGaCGCUGCGgaGCUUGACC---------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 36446 0.68 0.548136
Target:  5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3'
miRNA:   3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.