miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 40369 0.67 0.60285
Target:  5'- cUGCUGCccgcggcgcuGACGCCUCuGGCgcu-GGCCg -3'
miRNA:   3'- -ACGACG----------CUGCGGAGcUUGaccuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 30226 0.67 0.60285
Target:  5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3'
miRNA:   3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 19950 0.67 0.60285
Target:  5'- cGCUGgUGACGgCUCcucaguGCUGGAgcaguuccuGGCCa -3'
miRNA:   3'- aCGAC-GCUGCgGAGcu----UGACCU---------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 26113 0.67 0.601746
Target:  5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3'
miRNA:   3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20760 0.67 0.591821
Target:  5'- cUGCUGCccgGCUUCGGGCUGu--GCCg -3'
miRNA:   3'- -ACGACGcugCGGAGCUUGACcuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43732 0.67 0.591821
Target:  5'- cGCUGCaacccCGCCcccCGGgcuGCUGGAGGCg -3'
miRNA:   3'- aCGACGcu---GCGGa--GCU---UGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 23431 0.67 0.591821
Target:  5'- gUGCUGgGgcuGCGCCUCGGcgGCcGGcGGCg -3'
miRNA:   3'- -ACGACgC---UGCGGAGCU--UGaCCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 42007 0.67 0.591821
Target:  5'- cUGCcccgGCGGCGUCggcaCGGACgaGGgcGCCu -3'
miRNA:   3'- -ACGa---CGCUGCGGa---GCUUGa-CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 47326 0.67 0.580827
Target:  5'- gGCggacgGUGACGCCU-GAGCacaacgccauggUGGAuGCCa -3'
miRNA:   3'- aCGa----CGCUGCGGAgCUUG------------ACCUuCGG- -5'
11520 5' -55.8 NC_003085.1 + 20346 0.67 0.580827
Target:  5'- gGCcaCGGCGCCUC-AGCgcgGGAgcGGCCg -3'
miRNA:   3'- aCGacGCUGCGGAGcUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39509 0.67 0.580827
Target:  5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41078 0.67 0.57973
Target:  5'- gGCUGCcgaugagcgagcgGACuGCCUaccUGGACUGGGuggaGGCCc -3'
miRNA:   3'- aCGACG-------------CUG-CGGA---GCUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 47952 0.67 0.569876
Target:  5'- gGCUGCcucuUGCC-CGAGCgccGGAcgGGCCg -3'
miRNA:   3'- aCGACGcu--GCGGaGCUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 21488 0.67 0.569876
Target:  5'- cUGC-GCGGCGUggUGGACUGGuuccccuugGAGCCc -3'
miRNA:   3'- -ACGaCGCUGCGgaGCUUGACC---------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 18565 0.67 0.569876
Target:  5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3'
miRNA:   3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 36446 0.68 0.548136
Target:  5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3'
miRNA:   3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 29344 0.68 0.548136
Target:  5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3'
miRNA:   3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 16521 0.68 0.548136
Target:  5'- -aCUGcCGuCGCCUCGAAugacgucggcgcCUGGAuauggGGCCa -3'
miRNA:   3'- acGAC-GCuGCGGAGCUU------------GACCU-----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 46731 0.68 0.541664
Target:  5'- gGCgGCGaaGCGCCUCGGcaucACUGGcAacacgucugcccggcAGCCg -3'
miRNA:   3'- aCGaCGC--UGCGGAGCU----UGACC-U---------------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 14207 0.68 0.537363
Target:  5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3'
miRNA:   3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.