miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 3' -55.8 NC_003085.1 + 19529 0.66 0.636566
Target:  5'- -cCAGUGGCCgGuGuGCcacGGGUUGGUGu -3'
miRNA:   3'- guGUCACCGGgUuC-CGu--CUCAACCAC- -5'
11521 3' -55.8 NC_003085.1 + 46414 0.66 0.625354
Target:  5'- uCGCAGUGGUCUGgcGGGCgaguGGAGUagUGGa- -3'
miRNA:   3'- -GUGUCACCGGGU--UCCG----UCUCA--ACCac -5'
11521 3' -55.8 NC_003085.1 + 9619 0.66 0.625354
Target:  5'- aCGCuG-GGUCUAcuucguucGGGCGGAGUcUGGUGg -3'
miRNA:   3'- -GUGuCaCCGGGU--------UCCGUCUCA-ACCAC- -5'
11521 3' -55.8 NC_003085.1 + 23497 0.66 0.614148
Target:  5'- aGCAGUGGCa--AGGCGGAGUUc--- -3'
miRNA:   3'- gUGUCACCGgguUCCGUCUCAAccac -5'
11521 3' -55.8 NC_003085.1 + 16637 0.66 0.614148
Target:  5'- uCGCAGUGGCC--GGGCGccacGcAGUUGGa- -3'
miRNA:   3'- -GUGUCACCGGguUCCGU----C-UCAACCac -5'
11521 3' -55.8 NC_003085.1 + 37518 0.66 0.614148
Target:  5'- uGCGGUGGC--GGGcGCGGGGUUGGc- -3'
miRNA:   3'- gUGUCACCGggUUC-CGUCUCAACCac -5'
11521 3' -55.8 NC_003085.1 + 9028 0.67 0.558552
Target:  5'- cCGCGGcccuUGGCCCAGcGCAG-GUUGGc- -3'
miRNA:   3'- -GUGUC----ACCGGGUUcCGUCuCAACCac -5'
11521 3' -55.8 NC_003085.1 + 37028 0.67 0.524778
Target:  5'- aACA-UGGCCCcgcGGCccugccugucgagAGAGUUGGUGa -3'
miRNA:   3'- gUGUcACCGGGuu-CCG-------------UCUCAACCAC- -5'
11521 3' -55.8 NC_003085.1 + 44078 0.68 0.493908
Target:  5'- cCGCcGaGGCCCGAGuGCGgGAGUUGGa- -3'
miRNA:   3'- -GUGuCaCCGGGUUC-CGU-CUCAACCac -5'
11521 3' -55.8 NC_003085.1 + 17880 0.68 0.493908
Target:  5'- gCACAGgcGGCaCCGGGGCGGGc--GGUGg -3'
miRNA:   3'- -GUGUCa-CCG-GGUUCCGUCUcaaCCAC- -5'
11521 3' -55.8 NC_003085.1 + 17830 0.68 0.47311
Target:  5'- uGCGGcaGGCCCcuGGGGCAGuGcUGGUGc -3'
miRNA:   3'- gUGUCa-CCGGG--UUCCGUCuCaACCAC- -5'
11521 3' -55.8 NC_003085.1 + 46865 0.69 0.453768
Target:  5'- gAC-GUGGCCaccgucaucgucgcgGAGGCGGAGgUGGUGg -3'
miRNA:   3'- gUGuCACCGGg--------------UUCCGUCUCaACCAC- -5'
11521 3' -55.8 NC_003085.1 + 46863 0.69 0.452761
Target:  5'- gGCcuUGGCCUcgGAGGCAGGGgagagGGUGc -3'
miRNA:   3'- gUGucACCGGG--UUCCGUCUCaa---CCAC- -5'
11521 3' -55.8 NC_003085.1 + 28977 0.7 0.404084
Target:  5'- aCGCAGgGGCCCAAcGGC--AGUUGGg- -3'
miRNA:   3'- -GUGUCaCCGGGUU-CCGucUCAACCac -5'
11521 3' -55.8 NC_003085.1 + 17709 0.71 0.341769
Target:  5'- aGguGUGGCUCAAGGCAGAGa----- -3'
miRNA:   3'- gUguCACCGGGUUCCGUCUCaaccac -5'
11521 3' -55.8 NC_003085.1 + 4006 1.09 0.000673
Target:  5'- gCACAGUGGCCCAAGGCAGAGUUGGUGg -3'
miRNA:   3'- -GUGUCACCGGGUUCCGUCUCAACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.