miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 16202 0.69 0.348204
Target:  5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3'
miRNA:   3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 15282 0.69 0.365013
Target:  5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3'
miRNA:   3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5'
11521 5' -58.4 NC_003085.1 + 9192 0.68 0.39126
Target:  5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3'
miRNA:   3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 27027 0.68 0.39126
Target:  5'- -gUGCCugCGCGCUCgAcGCUgccaUUCGCc -3'
miRNA:   3'- cuGCGGugGCGCGGGgUaCGA----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 14014 0.68 0.38769
Target:  5'- cGACGCUccgcuucuucuucgGCgCGCGCCCCGUccgaaacGCg--CGCa -3'
miRNA:   3'- -CUGCGG--------------UG-GCGCGGGGUA-------CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 42522 0.68 0.39126
Target:  5'- cACGCCACCuGCgugGCCUCccGCU-UCGCc -3'
miRNA:   3'- cUGCGGUGG-CG---CGGGGuaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 38006 0.68 0.39126
Target:  5'- gGACGCucaCACCGCgucgGCCCCAacgGCgacCGCu -3'
miRNA:   3'- -CUGCG---GUGGCG----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 23234 0.68 0.39126
Target:  5'- aGACgGCCGCCGCGCUUCGcaccGCgccgcccgCGCa -3'
miRNA:   3'- -CUG-CGGUGGCGCGGGGUa---CGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 30255 0.68 0.409427
Target:  5'- cGGCGCCcagcccCCGcCGCCCCAgGCggaCGUg -3'
miRNA:   3'- -CUGCGGu-----GGC-GCGGGGUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 42818 0.68 0.382375
Target:  5'- gGAUGCCguccACCGCGCCCgCAUcGCcccgaCGCc -3'
miRNA:   3'- -CUGCGG----UGGCGCGGG-GUA-CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 34780 0.68 0.409428
Target:  5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3'
miRNA:   3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 48762 0.68 0.382375
Target:  5'- -cCGCCacGCCGCGCaacggugcgCCCAUGUUcgUCGUc -3'
miRNA:   3'- cuGCGG--UGGCGCG---------GGGUACGAa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 2717 0.68 0.382375
Target:  5'- uGACGCCACCaCGgCCCAaGCggguaGCu -3'
miRNA:   3'- -CUGCGGUGGcGCgGGGUaCGaaag-CG- -5'
11521 5' -58.4 NC_003085.1 + 45849 0.68 0.380614
Target:  5'- cGGCGCggcgaguccugaCGCCGCGUCCgGUGCUgguggugacgaCGCa -3'
miRNA:   3'- -CUGCG------------GUGGCGCGGGgUACGAaa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 10614 0.68 0.373626
Target:  5'- -cCGCCACuCGCGCUCCA-GCacUUCGa -3'
miRNA:   3'- cuGCGGUG-GCGCGGGGUaCGa-AAGCg -5'
11521 5' -58.4 NC_003085.1 + 42895 0.68 0.373626
Target:  5'- cGCGCCGCCaGCGCcggaCCCGUGCa----- -3'
miRNA:   3'- cUGCGGUGG-CGCG----GGGUACGaaagcg -5'
11521 5' -58.4 NC_003085.1 + 19024 0.68 0.390365
Target:  5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 8600 0.68 0.400278
Target:  5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3'
miRNA:   3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 38834 0.67 0.437641
Target:  5'- gGGCGCacuGCCGCGUcguCCCAcUGCgacggCGCg -3'
miRNA:   3'- -CUGCGg--UGGCGCG---GGGU-ACGaaa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.