Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 17598 | 0.67 | 0.437641 |
Target: 5'- cACGCCuGCUGCuCCgCCGUGCcuuccgUCGCg -3' miRNA: 3'- cUGCGG-UGGCGcGG-GGUACGaa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 38834 | 0.67 | 0.437641 |
Target: 5'- gGGCGCacuGCCGCGUcguCCCAcUGCgacggCGCg -3' miRNA: 3'- -CUGCGg--UGGCGCG---GGGU-ACGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 18939 | 0.67 | 0.436683 |
Target: 5'- aGCGCCAUCGCcuacaggGCCCCGcgacgGUgg-CGCg -3' miRNA: 3'- cUGCGGUGGCG-------CGGGGUa----CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2371 | 0.67 | 0.428112 |
Target: 5'- cGAgGCCGCgGCGCgCgA-GCUcUCGCa -3' miRNA: 3'- -CUgCGGUGgCGCGgGgUaCGAaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 16259 | 0.67 | 0.428112 |
Target: 5'- uGCGCCGCCGC-CUCCAggacgcccGCUacuggCGCg -3' miRNA: 3'- cUGCGGUGGCGcGGGGUa-------CGAaa---GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 27654 | 0.67 | 0.451184 |
Target: 5'- gGACGCCGCauCGCCaCCgacuacggcggcgacGUGCUggugcugUCGCg -3' miRNA: 3'- -CUGCGGUGgcGCGG-GG---------------UACGAa------AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 103 | 0.67 | 0.428112 |
Target: 5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3' miRNA: 3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2434 | 0.67 | 0.447291 |
Target: 5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3' miRNA: 3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 26791 | 0.67 | 0.466938 |
Target: 5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3' miRNA: 3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 17919 | 0.67 | 0.447291 |
Target: 5'- cGGCGCCugCGggcaccagcacUGCCCCAgggGCcugcCGCa -3' miRNA: 3'- -CUGCGGugGC-----------GCGGGGUa--CGaaa-GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 23336 | 0.67 | 0.447291 |
Target: 5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3' miRNA: 3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 26148 | 0.67 | 0.441487 |
Target: 5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3' miRNA: 3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 620 | 0.66 | 0.476927 |
Target: 5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3' miRNA: 3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 38311 | 0.66 | 0.476927 |
Target: 5'- gGugGCCACCGC-CgaCGUGCUgccgUCGa -3' miRNA: 3'- -CugCGGUGGCGcGggGUACGAa---AGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 20610 | 0.66 | 0.528343 |
Target: 5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3' miRNA: 3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 5635 | 0.66 | 0.487021 |
Target: 5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3' miRNA: 3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48454 | 0.66 | 0.487021 |
Target: 5'- cGGCGCUgcucGCCGCGCUCaggaGCg--CGCg -3' miRNA: 3'- -CUGCGG----UGGCGCGGGgua-CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15368 | 0.66 | 0.497215 |
Target: 5'- cGACGCC-CCGgGCCagCAUGaCgcgggCGCg -3' miRNA: 3'- -CUGCGGuGGCgCGGg-GUAC-Gaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48680 | 0.66 | 0.497215 |
Target: 5'- cGGCGCCAagcgcaucgcUCGCGCCuuCCcgGCggUgGCg -3' miRNA: 3'- -CUGCGGU----------GGCGCGG--GGuaCGaaAgCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 37035 | 0.66 | 0.507504 |
Target: 5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3' miRNA: 3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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