Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 37035 | 0.66 | 0.507504 |
Target: 5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3' miRNA: 3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 4787 | 0.66 | 0.517881 |
Target: 5'- --aGCCugCGUccaGCCCCAcUGCgugUGCa -3' miRNA: 3'- cugCGGugGCG---CGGGGU-ACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 984 | 0.66 | 0.517881 |
Target: 5'- cACGCCGCCGUGUCCaaggGCUa---- -3' miRNA: 3'- cUGCGGUGGCGCGGGgua-CGAaagcg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 5635 | 0.66 | 0.487021 |
Target: 5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3' miRNA: 3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48454 | 0.66 | 0.487021 |
Target: 5'- cGGCGCUgcucGCCGCGCUCaggaGCg--CGCg -3' miRNA: 3'- -CUGCGG----UGGCGCGGGgua-CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15368 | 0.66 | 0.497215 |
Target: 5'- cGACGCC-CCGgGCCagCAUGaCgcgggCGCg -3' miRNA: 3'- -CUGCGGuGGCgCGGg-GUAC-Gaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 20610 | 0.66 | 0.528343 |
Target: 5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3' miRNA: 3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 40636 | 0.66 | 0.528343 |
Target: 5'- uGGgGuCCACCGCgGCCgucaCCGUGCcgUCGUu -3' miRNA: 3'- -CUgC-GGUGGCG-CGG----GGUACGaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15187 | 0.66 | 0.528343 |
Target: 5'- cGCGgCGCgGCGCUCCAUccGCUcgUCGa -3' miRNA: 3'- cUGCgGUGgCGCGGGGUA--CGAa-AGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 20346 | 0.66 | 0.528342 |
Target: 5'- --gGCCACgGCGCCUCAgcGCgggaGCg -3' miRNA: 3'- cugCGGUGgCGCGGGGUa-CGaaagCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 620 | 0.66 | 0.476927 |
Target: 5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3' miRNA: 3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 40790 | 0.66 | 0.528342 |
Target: 5'- gGACGgCACCccgGCGCCCaagGCcacgCGCg -3' miRNA: 3'- -CUGCgGUGG---CGCGGGguaCGaaa-GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 20240 | 0.66 | 0.528342 |
Target: 5'- -uCGCCACCuuCGCCCaggugGCgcagUCGCu -3' miRNA: 3'- cuGCGGUGGc-GCGGGgua--CGaa--AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 42224 | 0.66 | 0.528342 |
Target: 5'- uGAUGCCACuCaCGUCCCAcgggacgGCUcgCGCu -3' miRNA: 3'- -CUGCGGUG-GcGCGGGGUa------CGAaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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