miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 28472 0.72 0.216343
Target:  5'- aGGCGCuCACCG-GCUgCGUGCUgaCGCg -3'
miRNA:   3'- -CUGCG-GUGGCgCGGgGUACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 27654 0.67 0.451184
Target:  5'- gGACGCCGCauCGCCaCCgacuacggcggcgacGUGCUggugcugUCGCg -3'
miRNA:   3'- -CUGCGGUGgcGCGG-GG---------------UACGAa------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 27027 0.68 0.39126
Target:  5'- -gUGCCugCGCGCUCgAcGCUgccaUUCGCc -3'
miRNA:   3'- cuGCGGugGCGCGGGgUaCGA----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 26791 0.67 0.466938
Target:  5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3'
miRNA:   3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 26148 0.67 0.441487
Target:  5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 25237 0.71 0.24626
Target:  5'- cGGCGCCGCCcugguGCGCUCCGcgGCgggcgUCGUc -3'
miRNA:   3'- -CUGCGGUGG-----CGCGGGGUa-CGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 24554 0.69 0.339197
Target:  5'- gGugGCCACCGcCGCCauguccuCCAccUGCgagCGCc -3'
miRNA:   3'- -CugCGGUGGC-GCGG-------GGU--ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 24066 0.7 0.316269
Target:  5'- uGACGCCACUGCGCgaCUCAaugGUcgUCGUg -3'
miRNA:   3'- -CUGCGGUGGCGCG--GGGUa--CGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 23336 0.67 0.447291
Target:  5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3'
miRNA:   3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 23234 0.68 0.39126
Target:  5'- aGACgGCCGCCGCGCUUCGcaccGCgccgcccgCGCa -3'
miRNA:   3'- -CUG-CGGUGGCGCGGGGUa---CGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 22549 0.71 0.265808
Target:  5'- -uCGCCACCGUGCCcuCCAUGUaccugUCGg -3'
miRNA:   3'- cuGCGGUGGCGCGG--GGUACGaa---AGCg -5'
11521 5' -58.4 NC_003085.1 + 21025 0.72 0.2339
Target:  5'- --aGCCACCGCaCCUCGUGCcagacgCGCg -3'
miRNA:   3'- cugCGGUGGCGcGGGGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 20610 0.66 0.528343
Target:  5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3'
miRNA:   3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 20346 0.66 0.528342
Target:  5'- --gGCCACgGCGCCUCAgcGCgggaGCg -3'
miRNA:   3'- cugCGGUGgCGCGGGGUa-CGaaagCG- -5'
11521 5' -58.4 NC_003085.1 + 20240 0.66 0.528342
Target:  5'- -uCGCCACCuuCGCCCaggugGCgcagUCGCu -3'
miRNA:   3'- cuGCGGUGGc-GCGGGgua--CGaa--AGCG- -5'
11521 5' -58.4 NC_003085.1 + 19766 0.71 0.265808
Target:  5'- aGAUGCCGCCGCGCgCCuccaggGCcgccaggaggUCGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGgGGua----CGaa--------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 19024 0.68 0.390365
Target:  5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 18939 0.67 0.436683
Target:  5'- aGCGCCAUCGCcuacaggGCCCCGcgacgGUgg-CGCg -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUa----CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 18642 0.71 0.265808
Target:  5'- aGCGUuuCGCCGUGCCCCcgcgcaucuGUGCgagCGCa -3'
miRNA:   3'- cUGCG--GUGGCGCGGGG---------UACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.