Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 8600 | 0.68 | 0.400278 |
Target: 5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3' miRNA: 3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 7350 | 0.69 | 0.348204 |
Target: 5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3' miRNA: 3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 5635 | 0.66 | 0.487021 |
Target: 5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3' miRNA: 3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 5252 | 0.7 | 0.293074 |
Target: 5'- cGGCGCCGCCcugccuuccGCGCCaggauggCCGcUGCcUUCGCg -3' miRNA: 3'- -CUGCGGUGG---------CGCGG-------GGU-ACGaAAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 4787 | 0.66 | 0.517881 |
Target: 5'- --aGCCugCGUccaGCCCCAcUGCgugUGCa -3' miRNA: 3'- cugCGGugGCG---CGGGGU-ACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 4042 | 1.11 | 0.000293 |
Target: 5'- cGACGCCACCGCGCCCCAUGCUUUCGCu -3' miRNA: 3'- -CUGCGGUGGCGCGGGGUACGAAAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2717 | 0.68 | 0.382375 |
Target: 5'- uGACGCCACCaCGgCCCAaGCggguaGCu -3' miRNA: 3'- -CUGCGGUGGcGCgGGGUaCGaaag-CG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2434 | 0.67 | 0.447291 |
Target: 5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3' miRNA: 3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2371 | 0.67 | 0.428112 |
Target: 5'- cGAgGCCGCgGCGCgCgA-GCUcUCGCa -3' miRNA: 3'- -CUgCGGUGgCGCGgGgUaCGAaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 1393 | 0.71 | 0.259156 |
Target: 5'- aGCGCCAUCGCaGUgCCA-GCcUUCGCg -3' miRNA: 3'- cUGCGGUGGCG-CGgGGUaCGaAAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 1000 | 0.72 | 0.227919 |
Target: 5'- gGACGCgGCCGaCGCUCCAggacucGCUcUUCGUg -3' miRNA: 3'- -CUGCGgUGGC-GCGGGGUa-----CGA-AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 984 | 0.66 | 0.517881 |
Target: 5'- cACGCCGCCGUGUCCaaggGCUa---- -3' miRNA: 3'- cUGCGGUGGCGCGGGgua-CGAaagcg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 620 | 0.66 | 0.476927 |
Target: 5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3' miRNA: 3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 103 | 0.67 | 0.428112 |
Target: 5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3' miRNA: 3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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