Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 26791 | 0.67 | 0.466938 |
Target: 5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3' miRNA: 3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 17919 | 0.67 | 0.447291 |
Target: 5'- cGGCGCCugCGggcaccagcacUGCCCCAgggGCcugcCGCa -3' miRNA: 3'- -CUGCGGugGC-----------GCGGGGUa--CGaaa-GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 23336 | 0.67 | 0.447291 |
Target: 5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3' miRNA: 3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48762 | 0.68 | 0.382375 |
Target: 5'- -cCGCCacGCCGCGCaacggugcgCCCAUGUUcgUCGUc -3' miRNA: 3'- cuGCGG--UGGCGCG---------GGGUACGAa-AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 42818 | 0.68 | 0.382375 |
Target: 5'- gGAUGCCguccACCGCGCCCgCAUcGCcccgaCGCc -3' miRNA: 3'- -CUGCGG----UGGCGCGGG-GUA-CGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 14014 | 0.68 | 0.38769 |
Target: 5'- cGACGCUccgcuucuucuucgGCgCGCGCCCCGUccgaaacGCg--CGCa -3' miRNA: 3'- -CUGCGG--------------UG-GCGCGGGGUA-------CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 19024 | 0.68 | 0.390365 |
Target: 5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3' miRNA: 3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 18076 | 0.68 | 0.400278 |
Target: 5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3' miRNA: 3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 8600 | 0.68 | 0.400278 |
Target: 5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3' miRNA: 3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 34780 | 0.68 | 0.409428 |
Target: 5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3' miRNA: 3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 103 | 0.67 | 0.428112 |
Target: 5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3' miRNA: 3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 26148 | 0.67 | 0.441487 |
Target: 5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3' miRNA: 3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2434 | 0.67 | 0.447291 |
Target: 5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3' miRNA: 3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15187 | 0.66 | 0.528343 |
Target: 5'- cGCGgCGCgGCGCUCCAUccGCUcgUCGa -3' miRNA: 3'- cUGCgGUGgCGCGGGGUA--CGAa-AGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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