miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 3' -61.6 NC_003085.1 + 14910 0.66 0.350398
Target:  5'- gGAGUUGcgcaccGGcCGCCaGCGCgUGGcGCUCCAa -3'
miRNA:   3'- -CUCAAC------CC-GCGG-CGCG-ACCcUGAGGU- -5'
11522 3' -61.6 NC_003085.1 + 48315 0.66 0.3296
Target:  5'- -----cGGCGCCGCGCUgcuggaggaguuggaGGGGCUgCGg -3'
miRNA:   3'- cucaacCCGCGGCGCGA---------------CCCUGAgGU- -5'
11522 3' -61.6 NC_003085.1 + 41451 0.66 0.326482
Target:  5'- cGAGUUGGcGCGCaagGCUGGGGCg--- -3'
miRNA:   3'- -CUCAACC-CGCGgcgCGACCCUGaggu -5'
11522 3' -61.6 NC_003085.1 + 41921 0.68 0.275466
Target:  5'- cGAGgUGGaccaGCGCCGgGC-GGGACUCa- -3'
miRNA:   3'- -CUCaACC----CGCGGCgCGaCCCUGAGgu -5'
11522 3' -61.6 NC_003085.1 + 37099 0.68 0.236986
Target:  5'- cGGUguccGGGuCGCCacugaaggucaGCGCUGGGGCgCCAg -3'
miRNA:   3'- cUCAa---CCC-GCGG-----------CGCGACCCUGaGGU- -5'
11522 3' -61.6 NC_003085.1 + 23445 0.69 0.219491
Target:  5'- uGGUUGGGguCGaaGUGCUGGGGCUgCGc -3'
miRNA:   3'- cUCAACCC--GCggCGCGACCCUGAgGU- -5'
11522 3' -61.6 NC_003085.1 + 30317 0.69 0.203112
Target:  5'- gGGGcUGGGCGCCGCGCaaGGccuGCgCCAg -3'
miRNA:   3'- -CUCaACCCGCGGCGCGacCC---UGaGGU- -5'
11522 3' -61.6 NC_003085.1 + 16329 0.7 0.19279
Target:  5'- gGAGUUGGGCGaaGCGCUGu--CUCUg -3'
miRNA:   3'- -CUCAACCCGCggCGCGACccuGAGGu -5'
11522 3' -61.6 NC_003085.1 + 29474 0.7 0.17817
Target:  5'- ---aUGGGCugGCCGCGCUGGcGcagcaACUCCGc -3'
miRNA:   3'- cucaACCCG--CGGCGCGACC-C-----UGAGGU- -5'
11522 3' -61.6 NC_003085.1 + 19604 0.71 0.160212
Target:  5'- -cGUcGGGCGCCGUccGCUGGGcuGCUCgAa -3'
miRNA:   3'- cuCAaCCCGCGGCG--CGACCC--UGAGgU- -5'
11522 3' -61.6 NC_003085.1 + 14998 0.72 0.125656
Target:  5'- cGAGUUGGaGCGCCacGCGCUGGcGgccggugcgcaACUCCu -3'
miRNA:   3'- -CUCAACC-CGCGG--CGCGACC-C-----------UGAGGu -5'
11522 3' -61.6 NC_003085.1 + 41199 0.75 0.085384
Target:  5'- cAGUacgGGGUGCCGCGCucggccUGGGcCUCCAc -3'
miRNA:   3'- cUCAa--CCCGCGGCGCG------ACCCuGAGGU- -5'
11522 3' -61.6 NC_003085.1 + 4112 1.07 0.000246
Target:  5'- gGAGUUGGGCGCCGCGCUGGGACUCCAg -3'
miRNA:   3'- -CUCAACCCGCGGCGCGACCCUGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.