miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 5' -57 NC_003085.1 + 27170 0.67 0.488518
Target:  5'- gACGG-GCGAC-GCUGGCuucgGCGuCUCUc -3'
miRNA:   3'- aUGCCuCGCUGaCGACCG----CGUuGAGG- -5'
11522 5' -57 NC_003085.1 + 42739 0.67 0.487488
Target:  5'- -uCGGGGCGA-UGCgGGCGCGguggacgGCaUCCa -3'
miRNA:   3'- auGCCUCGCUgACGaCCGCGU-------UG-AGG- -5'
11522 5' -57 NC_003085.1 + 48794 0.68 0.468108
Target:  5'- cACGGAcagGCGAgaggUGCUGGUggGCGAgUCCg -3'
miRNA:   3'- aUGCCU---CGCUg---ACGACCG--CGUUgAGG- -5'
11522 5' -57 NC_003085.1 + 15347 0.68 0.468108
Target:  5'- cGCGGGcGCGGCgggugaGCUcGGCcGCGGcCUCCg -3'
miRNA:   3'- aUGCCU-CGCUGa-----CGA-CCG-CGUU-GAGG- -5'
11522 5' -57 NC_003085.1 + 6157 0.68 0.458068
Target:  5'- gACGGAG-GACUcccuggggccGCUGGUGCAucccggugggGCUCg -3'
miRNA:   3'- aUGCCUCgCUGA----------CGACCGCGU----------UGAGg -5'
11522 5' -57 NC_003085.1 + 37161 0.68 0.458068
Target:  5'- -cUGGAGCGACUGC--GCGCcg-UCCa -3'
miRNA:   3'- auGCCUCGCUGACGacCGCGuugAGG- -5'
11522 5' -57 NC_003085.1 + 48766 0.68 0.458068
Target:  5'- cGCGGAguugccccgugGCGACUgGC-GGCGCuuCUUCg -3'
miRNA:   3'- aUGCCU-----------CGCUGA-CGaCCGCGuuGAGG- -5'
11522 5' -57 NC_003085.1 + 30328 0.68 0.448144
Target:  5'- -cUGGGGCGGCggggGCUgGGCGCcGCgcaaggCCu -3'
miRNA:   3'- auGCCUCGCUGa---CGA-CCGCGuUGa-----GG- -5'
11522 5' -57 NC_003085.1 + 23769 0.68 0.448144
Target:  5'- gACGGAGgaGGCUGCUG-CGCGgGC-CCg -3'
miRNA:   3'- aUGCCUCg-CUGACGACcGCGU-UGaGG- -5'
11522 5' -57 NC_003085.1 + 20506 0.68 0.428662
Target:  5'- aGCGGuaccGCGACga---GCGCGACUCCg -3'
miRNA:   3'- aUGCCu---CGCUGacgacCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 22022 0.69 0.409688
Target:  5'- aAUGGAGCGucucuggcCUGCgUGGCaGCAGCaCCa -3'
miRNA:   3'- aUGCCUCGCu-------GACG-ACCG-CGUUGaGG- -5'
11522 5' -57 NC_003085.1 + 29393 0.69 0.38223
Target:  5'- gGCGGAGUuGCUGCgccaGCGCGGCcagCCc -3'
miRNA:   3'- aUGCCUCGcUGACGac--CGCGUUGa--GG- -5'
11522 5' -57 NC_003085.1 + 10828 0.69 0.38223
Target:  5'- -cCGGgcAGCGACUGCgggagugGGaUGCgAGCUCCg -3'
miRNA:   3'- auGCC--UCGCUGACGa------CC-GCG-UUGAGG- -5'
11522 5' -57 NC_003085.1 + 6640 0.7 0.347575
Target:  5'- gACGuGAGCGcaaGgUGCUGGCGUcccAACUCg -3'
miRNA:   3'- aUGC-CUCGC---UgACGACCGCG---UUGAGg -5'
11522 5' -57 NC_003085.1 + 2014 0.7 0.33111
Target:  5'- aGCGGAuGCGGCg--UGGCGCGAUguguUCCa -3'
miRNA:   3'- aUGCCU-CGCUGacgACCGCGUUG----AGG- -5'
11522 5' -57 NC_003085.1 + 22200 0.71 0.315225
Target:  5'- uUugGGucCGGCUGCUgcGGCGCcgGGCUCUg -3'
miRNA:   3'- -AugCCucGCUGACGA--CCGCG--UUGAGG- -5'
11522 5' -57 NC_003085.1 + 7328 0.71 0.306737
Target:  5'- cGCGGAgGCGGCUgaggacgcggGCUacacgcgccccugGGCGCcGCUCCa -3'
miRNA:   3'- aUGCCU-CGCUGA----------CGA-------------CCGCGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 14994 0.71 0.299923
Target:  5'- -uUGGAGCGccACgcGCUGGCggccggugcGCAACUCCu -3'
miRNA:   3'- auGCCUCGC--UGa-CGACCG---------CGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 34620 0.71 0.29249
Target:  5'- cGCGGGcCGGCUGgUGGCGCucGCggCCg -3'
miRNA:   3'- aUGCCUcGCUGACgACCGCGu-UGa-GG- -5'
11522 5' -57 NC_003085.1 + 9141 0.71 0.285202
Target:  5'- --gGGAGCGGCacCUGGCGgAGCUCg -3'
miRNA:   3'- augCCUCGCUGacGACCGCgUUGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.