miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11525 3' -52.7 NC_003085.1 + 37860 0.66 0.861363
Target:  5'- gCGcGCCGAUGGcgaggaUGuuGACGGucuucgcuGUACCa -3'
miRNA:   3'- aGCaCGGCUGCC------ACggCUGUU--------UAUGG- -5'
11525 3' -52.7 NC_003085.1 + 42833 0.66 0.861363
Target:  5'- ---aGCCGACGc-GgCGAUGGAUGCCg -3'
miRNA:   3'- agcaCGGCUGCcaCgGCUGUUUAUGG- -5'
11525 3' -52.7 NC_003085.1 + 25357 0.66 0.856331
Target:  5'- cCG-GCCGucGCGGUgagguagacgggcgcGCCGACGAcgACg -3'
miRNA:   3'- aGCaCGGC--UGCCA---------------CGGCUGUUuaUGg -5'
11525 3' -52.7 NC_003085.1 + 19783 0.66 0.852928
Target:  5'- cUCGUGCuCGAaGGUGCa----GAUGCCg -3'
miRNA:   3'- -AGCACG-GCUgCCACGgcuguUUAUGG- -5'
11525 3' -52.7 NC_003085.1 + 9353 0.66 0.847752
Target:  5'- aUCG-GCCugugGACGcagGCCGACAAggaagggcugcuugaGUACCg -3'
miRNA:   3'- -AGCaCGG----CUGCca-CGGCUGUU---------------UAUGG- -5'
11525 3' -52.7 NC_003085.1 + 27274 0.66 0.844255
Target:  5'- -aGUGCCcACGcUGCgUGACGAAUGCg -3'
miRNA:   3'- agCACGGcUGCcACG-GCUGUUUAUGg -5'
11525 3' -52.7 NC_003085.1 + 16588 0.66 0.844255
Target:  5'- -gGUGUCGGuaGUGCCGACAcccuuCCu -3'
miRNA:   3'- agCACGGCUgcCACGGCUGUuuau-GG- -5'
11525 3' -52.7 NC_003085.1 + 2172 0.66 0.844255
Target:  5'- ---cGCCGAUGGcGCCGA--GGUGCg -3'
miRNA:   3'- agcaCGGCUGCCaCGGCUguUUAUGg -5'
11525 3' -52.7 NC_003085.1 + 17565 0.66 0.844255
Target:  5'- --uUGCCGggacuccucGCGGUuCCGcGCGAGUGCCu -3'
miRNA:   3'- agcACGGC---------UGCCAcGGC-UGUUUAUGG- -5'
11525 3' -52.7 NC_003085.1 + 38114 0.66 0.844255
Target:  5'- aUCGUcUCGGaGGUGCCGugAGGcucGCCg -3'
miRNA:   3'- -AGCAcGGCUgCCACGGCugUUUa--UGG- -5'
11525 3' -52.7 NC_003085.1 + 42023 0.66 0.844255
Target:  5'- -gGUGCgucuCGGUGgCGGCAAGUgggGCCa -3'
miRNA:   3'- agCACGgcu-GCCACgGCUGUUUA---UGG- -5'
11525 3' -52.7 NC_003085.1 + 40323 0.66 0.835353
Target:  5'- ---cGCCGGCaaGG-GCUGGCGcGUGCCu -3'
miRNA:   3'- agcaCGGCUG--CCaCGGCUGUuUAUGG- -5'
11525 3' -52.7 NC_003085.1 + 22780 0.66 0.826231
Target:  5'- -gGUGgCGACGGcagCGGCAAcgGCCg -3'
miRNA:   3'- agCACgGCUGCCacgGCUGUUuaUGG- -5'
11525 3' -52.7 NC_003085.1 + 10946 0.66 0.826231
Target:  5'- -gGUGCgCGuguUGGUGCUcgaugacuugGGCGGAUGCCc -3'
miRNA:   3'- agCACG-GCu--GCCACGG----------CUGUUUAUGG- -5'
11525 3' -52.7 NC_003085.1 + 38818 0.66 0.816898
Target:  5'- cCGUGuCCG-UGGUGCCuACA---GCCg -3'
miRNA:   3'- aGCAC-GGCuGCCACGGcUGUuuaUGG- -5'
11525 3' -52.7 NC_003085.1 + 40618 0.66 0.816898
Target:  5'- cUGUGCUGACGGccgcUGCCGuccuCGuc-GCCc -3'
miRNA:   3'- aGCACGGCUGCC----ACGGCu---GUuuaUGG- -5'
11525 3' -52.7 NC_003085.1 + 38223 0.67 0.807367
Target:  5'- cUCGUGCacucuCGACGGcagcacGUCGGCGGugGCCa -3'
miRNA:   3'- -AGCACG-----GCUGCCa-----CGGCUGUUuaUGG- -5'
11525 3' -52.7 NC_003085.1 + 940 0.67 0.777682
Target:  5'- gUCG-GCCGcguccgGGUGCCaGACAGGccgcUGCCg -3'
miRNA:   3'- -AGCaCGGCug----CCACGG-CUGUUU----AUGG- -5'
11525 3' -52.7 NC_003085.1 + 11138 0.67 0.777682
Target:  5'- gUCGUcucUCGGauGUGCCGACAGGggACCu -3'
miRNA:   3'- -AGCAc--GGCUgcCACGGCUGUUUa-UGG- -5'
11525 3' -52.7 NC_003085.1 + 26799 0.67 0.777682
Target:  5'- aCGUGCCggaGACGGgauucgGCC-AguGAUGCCc -3'
miRNA:   3'- aGCACGG---CUGCCa-----CGGcUguUUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.