miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11525 5' -62.5 NC_003085.1 + 33099 0.66 0.34785
Target:  5'- aGGcUCACUCcUGGguGGCGCUgUCGAa -3'
miRNA:   3'- aCCcAGUGGGuGCCguCCGCGA-GGCU- -5'
11525 5' -62.5 NC_003085.1 + 43750 0.66 0.339887
Target:  5'- cGGGUcCGCCC-CGGUgguGGGCGCgggCUu- -3'
miRNA:   3'- aCCCA-GUGGGuGCCG---UCCGCGa--GGcu -5'
11525 5' -62.5 NC_003085.1 + 40357 0.66 0.332057
Target:  5'- gUGGG-CaagccgcugcuGCCCGCGGCGcugacgccucuGGCGCUggCCGGc -3'
miRNA:   3'- -ACCCaG-----------UGGGUGCCGU-----------CCGCGA--GGCU- -5'
11525 5' -62.5 NC_003085.1 + 12397 0.66 0.330507
Target:  5'- cGGGUgCugCUGCucgacccGGCGGggccgcuGCGCUCCGAg -3'
miRNA:   3'- aCCCA-GugGGUG-------CCGUC-------CGCGAGGCU- -5'
11525 5' -62.5 NC_003085.1 + 31702 0.66 0.327423
Target:  5'- cUGGGcUCAggcacgacuucaggcCCCGCGGCcGGUGcCUCCu- -3'
miRNA:   3'- -ACCC-AGU---------------GGGUGCCGuCCGC-GAGGcu -5'
11525 5' -62.5 NC_003085.1 + 29096 0.66 0.324361
Target:  5'- cGGGUUGCCCggcgucagcaGCGGCGacgcGGCGCggaaCCa- -3'
miRNA:   3'- aCCCAGUGGG----------UGCCGU----CCGCGa---GGcu -5'
11525 5' -62.5 NC_003085.1 + 29019 0.66 0.309369
Target:  5'- uUGGGagGCCCACGGCguguugauguugGGGCGgUUgGc -3'
miRNA:   3'- -ACCCagUGGGUGCCG------------UCCGCgAGgCu -5'
11525 5' -62.5 NC_003085.1 + 5194 0.66 0.307166
Target:  5'- cGGGcguagccuUCGCCCGCGGCGacGCGagaaacgccuccaaCUCCGAc -3'
miRNA:   3'- aCCC--------AGUGGGUGCCGUc-CGC--------------GAGGCU- -5'
11525 5' -62.5 NC_003085.1 + 12967 0.67 0.302073
Target:  5'- gGGGUCGCCauugCACGGgAGGC--UUCGAg -3'
miRNA:   3'- aCCCAGUGG----GUGCCgUCCGcgAGGCU- -5'
11525 5' -62.5 NC_003085.1 + 30653 0.67 0.302073
Target:  5'- gUGGcgaGUCG-CUGCGGCAgGGCGCUCUGc -3'
miRNA:   3'- -ACC---CAGUgGGUGCCGU-CCGCGAGGCu -5'
11525 5' -62.5 NC_003085.1 + 4176 0.67 0.301351
Target:  5'- cGcGG-CGCCCaacuccaGCGGCgagugcGGGCGCUCCa- -3'
miRNA:   3'- aC-CCaGUGGG-------UGCCG------UCCGCGAGGcu -5'
11525 5' -62.5 NC_003085.1 + 22837 0.67 0.294911
Target:  5'- --cGUCGCcaCCGCGGCGGGCGUcgUCGGc -3'
miRNA:   3'- accCAGUG--GGUGCCGUCCGCGa-GGCU- -5'
11525 5' -62.5 NC_003085.1 + 26389 0.67 0.287881
Target:  5'- cGGGccgcugagCGCCCAgGGCuGGCaguuGCUCCa- -3'
miRNA:   3'- aCCCa-------GUGGGUgCCGuCCG----CGAGGcu -5'
11525 5' -62.5 NC_003085.1 + 25248 0.67 0.280984
Target:  5'- -uGGUgCGCuCCGCGGCGGGCGUcgUCGu -3'
miRNA:   3'- acCCA-GUG-GGUGCCGUCCGCGa-GGCu -5'
11525 5' -62.5 NC_003085.1 + 34763 0.67 0.280984
Target:  5'- cGGGUguuCCCAcuucggguuCGGCAGGCGCaguaCGAc -3'
miRNA:   3'- aCCCAgu-GGGU---------GCCGUCCGCGag--GCU- -5'
11525 5' -62.5 NC_003085.1 + 43835 0.68 0.248461
Target:  5'- uUGaGGUCGCgCA-GGCGGGCGUUCUc- -3'
miRNA:   3'- -AC-CCAGUGgGUgCCGUCCGCGAGGcu -5'
11525 5' -62.5 NC_003085.1 + 17923 0.68 0.242342
Target:  5'- cGGGU-GCCUGCGcccaGCGcGGCGCUCUGGg -3'
miRNA:   3'- aCCCAgUGGGUGC----CGU-CCGCGAGGCU- -5'
11525 5' -62.5 NC_003085.1 + 23428 0.68 0.242342
Target:  5'- cUGGGgcugCGCCUcgGCGGCcggcGGCGCUuggCCGGc -3'
miRNA:   3'- -ACCCa---GUGGG--UGCCGu---CCGCGA---GGCU- -5'
11525 5' -62.5 NC_003085.1 + 28840 0.68 0.241737
Target:  5'- aUGGGgaagcaagCACCCGCGccgcccgacuuccGC-GGCGCUgCCGAg -3'
miRNA:   3'- -ACCCa-------GUGGGUGC-------------CGuCCGCGA-GGCU- -5'
11525 5' -62.5 NC_003085.1 + 1593 0.69 0.213611
Target:  5'- cUGGaGUCACgCCugGCGGCcgugAGGCGCaccggCCGAg -3'
miRNA:   3'- -ACC-CAGUG-GG--UGCCG----UCCGCGa----GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.