miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11531 5' -59.7 NC_003085.1 + 13974 0.65 0.471765
Target:  5'- cGCGCGCaCGCCGCaccGGUuggagcaguagagCUUGCGgCu -3'
miRNA:   3'- -CGCGUG-GCGGUGguuCCG-------------GAACGCgG- -5'
11531 5' -59.7 NC_003085.1 + 5594 0.65 0.470777
Target:  5'- cGCGCACCagugcgagcacguGCCgacgcgucagcacACCGAGuuCCUUGuCGCCc -3'
miRNA:   3'- -CGCGUGG-------------CGG-------------UGGUUCc-GGAAC-GCGG- -5'
11531 5' -59.7 NC_003085.1 + 2301 0.66 0.466833
Target:  5'- uGCGCACCagcgguuccacgagcGCCACU--GGCUUcUGUGUCu -3'
miRNA:   3'- -CGCGUGG---------------CGGUGGuuCCGGA-ACGCGG- -5'
11531 5' -59.7 NC_003085.1 + 17247 0.66 0.466833
Target:  5'- cGCGCACCGCgcacggcugUACCugcuucggagggauGGGCgaugaggaUGCGCCg -3'
miRNA:   3'- -CGCGUGGCG---------GUGGu-------------UCCGga------ACGCGG- -5'
11531 5' -59.7 NC_003085.1 + 44080 0.66 0.462906
Target:  5'- aGCGguUCGCCGuCCAucGCCgcgGCcaGCCg -3'
miRNA:   3'- -CGCguGGCGGU-GGUucCGGaa-CG--CGG- -5'
11531 5' -59.7 NC_003085.1 + 13832 0.66 0.462906
Target:  5'- cGUGCAgaCGCCGcCCAGGGaa--GUGCCg -3'
miRNA:   3'- -CGCGUg-GCGGU-GGUUCCggaaCGCGG- -5'
11531 5' -59.7 NC_003085.1 + 26655 0.66 0.462906
Target:  5'- aGCGUGUCGCCGCCGGacuCCggUGCGUCg -3'
miRNA:   3'- -CGCGUGGCGGUGGUUcc-GGa-ACGCGG- -5'
11531 5' -59.7 NC_003085.1 + 35867 0.66 0.462906
Target:  5'- aGCGCaACC-CCAUgGAcaaggacaccGGCCgucGCGCCg -3'
miRNA:   3'- -CGCG-UGGcGGUGgUU----------CCGGaa-CGCGG- -5'
11531 5' -59.7 NC_003085.1 + 1639 0.66 0.462906
Target:  5'- cCGCGCCGCaCugCAGgcgacgcgcacGGCCUcGCGaCa -3'
miRNA:   3'- cGCGUGGCG-GugGUU-----------CCGGAaCGCgG- -5'
11531 5' -59.7 NC_003085.1 + 23255 0.66 0.462906
Target:  5'- cCGCGCCGCCcgcGCaCAAGGCgCagcucgucGCGCa -3'
miRNA:   3'- cGCGUGGCGG---UG-GUUCCG-Gaa------CGCGg -5'
11531 5' -59.7 NC_003085.1 + 10018 0.66 0.462906
Target:  5'- --aCAUUGCCGcCCGAGuCCuUUGCGCCa -3'
miRNA:   3'- cgcGUGGCGGU-GGUUCcGG-AACGCGG- -5'
11531 5' -59.7 NC_003085.1 + 47334 0.66 0.462906
Target:  5'- aGCGCGCCGCCcuuGCCcau-CCaUGCGUg -3'
miRNA:   3'- -CGCGUGGCGG---UGGuuccGGaACGCGg -5'
11531 5' -59.7 NC_003085.1 + 38497 0.66 0.462906
Target:  5'- uCGU-CCGCCcucgACCAGGGCaCgaGCGCa -3'
miRNA:   3'- cGCGuGGCGG----UGGUUCCG-GaaCGCGg -5'
11531 5' -59.7 NC_003085.1 + 7645 0.66 0.462906
Target:  5'- aGCGCAUcaaCGgCGCCGAGuCCU-GgGCCa -3'
miRNA:   3'- -CGCGUG---GCgGUGGUUCcGGAaCgCGG- -5'
11531 5' -59.7 NC_003085.1 + 36746 0.66 0.462906
Target:  5'- uGCGCuACCuccccucgGCCGCC--GGCCU--CGCCg -3'
miRNA:   3'- -CGCG-UGG--------CGGUGGuuCCGGAacGCGG- -5'
11531 5' -59.7 NC_003085.1 + 42519 0.66 0.453167
Target:  5'- uCGCA-CGCCACCugcguGGCCUcccgcuuCGCCu -3'
miRNA:   3'- cGCGUgGCGGUGGuu---CCGGAac-----GCGG- -5'
11531 5' -59.7 NC_003085.1 + 14850 0.66 0.453167
Target:  5'- uUGCACCcCgCGCCGuuuGGCCUcgUGUGCg -3'
miRNA:   3'- cGCGUGGcG-GUGGUu--CCGGA--ACGCGg -5'
11531 5' -59.7 NC_003085.1 + 43574 0.66 0.453167
Target:  5'- cGCGuCACCgacccggcGCCACggcaGAGGUCgcagGCGCUg -3'
miRNA:   3'- -CGC-GUGG--------CGGUGg---UUCCGGaa--CGCGG- -5'
11531 5' -59.7 NC_003085.1 + 40365 0.66 0.453167
Target:  5'- aGgGCGaCGCUGCCcAGGCCg-GCGCa -3'
miRNA:   3'- -CgCGUgGCGGUGGuUCCGGaaCGCGg -5'
11531 5' -59.7 NC_003085.1 + 43989 0.66 0.453167
Target:  5'- cGCGUuguCCGCCuCCAacucccgcacucGGGCCUcgGCGgUg -3'
miRNA:   3'- -CGCGu--GGCGGuGGU------------UCCGGAa-CGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.