miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 24877 0.68 0.259857
Target:  5'- --aGCCGCGcGCCgCGaCGGGCUgagcggCACCa -3'
miRNA:   3'- uccCGGCGC-CGGaGC-GCCUGAa-----GUGG- -5'
11532 3' -62 NC_003085.1 + 25371 0.7 0.212693
Target:  5'- cGGGCaCGCcGaCg-GCGGGCUUCACCg -3'
miRNA:   3'- uCCCG-GCGcCgGagCGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 25493 0.73 0.125968
Target:  5'- cAGGGagaaucccaugCGUGGUCUCGCGGAUgagUCGCUg -3'
miRNA:   3'- -UCCCg----------GCGCCGGAGCGCCUGa--AGUGG- -5'
11532 3' -62 NC_003085.1 + 26149 0.69 0.223183
Target:  5'- cGGGCUGCuGGCCaccgacgUCGCGGACccguaugCGuCCg -3'
miRNA:   3'- uCCCGGCG-CCGG-------AGCGCCUGaa-----GU-GG- -5'
11532 3' -62 NC_003085.1 + 27500 0.67 0.325767
Target:  5'- aAGGGCUGCgcuguaccggcgauuGcGCC-CGCGGGCaggUACCa -3'
miRNA:   3'- -UCCCGGCG---------------C-CGGaGCGCCUGaa-GUGG- -5'
11532 3' -62 NC_003085.1 + 27601 0.66 0.370585
Target:  5'- -cGGCCaccuuCGGCCUgCGCGGugUguggaGCCu -3'
miRNA:   3'- ucCCGGc----GCCGGA-GCGCCugAag---UGG- -5'
11532 3' -62 NC_003085.1 + 30002 0.66 0.337366
Target:  5'- gAGcGGCCcuggGCGGCCUuggcgacgucgucCGCGG-CUUCcaggGCCa -3'
miRNA:   3'- -UC-CCGG----CGCCGGA-------------GCGCCuGAAG----UGG- -5'
11532 3' -62 NC_003085.1 + 30120 0.69 0.234697
Target:  5'- uGGGCCuGCugcaacuugugcuGGCCcuggaagcCGCGGACgacgUCGCCa -3'
miRNA:   3'- uCCCGG-CG-------------CCGGa-------GCGCCUGa---AGUGG- -5'
11532 3' -62 NC_003085.1 + 30206 0.66 0.346062
Target:  5'- uGGGCUGCuggGGCCggcgGCGGAUggCGuCCg -3'
miRNA:   3'- uCCCGGCG---CCGGag--CGCCUGaaGU-GG- -5'
11532 3' -62 NC_003085.1 + 31691 0.68 0.282355
Target:  5'- gGGGGCCcuUGGCUUCGCucaggguggcaccuuGGGCUUUGCa -3'
miRNA:   3'- -UCCCGGc-GCCGGAGCG---------------CCUGAAGUGg -5'
11532 3' -62 NC_003085.1 + 31795 0.66 0.370585
Target:  5'- aAGcGGCC-CGGCCgcucgCGaCGGACa-CACCc -3'
miRNA:   3'- -UC-CCGGcGCCGGa----GC-GCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 32047 0.67 0.31521
Target:  5'- gGGGGCggcgaGUGGCCUgggggacagcaaUGCGGACcugaGCCg -3'
miRNA:   3'- -UCCCGg----CGCCGGA------------GCGCCUGaag-UGG- -5'
11532 3' -62 NC_003085.1 + 32847 0.66 0.379019
Target:  5'- gAGaGGCCGCGcGCCgCG-GGAC--CGCCc -3'
miRNA:   3'- -UC-CCGGCGC-CGGaGCgCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 32910 0.69 0.247318
Target:  5'- -cGGCgCGCGGCCUCuCGGGCcccaaucagUCGCg -3'
miRNA:   3'- ucCCG-GCGCCGGAGcGCCUGa--------AGUGg -5'
11532 3' -62 NC_003085.1 + 33909 0.68 0.286482
Target:  5'- uGGGCCgGUGGCCggGCGGAgagCGuCCa -3'
miRNA:   3'- uCCCGG-CGCCGGagCGCCUgaaGU-GG- -5'
11532 3' -62 NC_003085.1 + 34618 0.72 0.153397
Target:  5'- cGGGCCggcugGUGGCgCUCGCGGccGCUguguugcugacgcugUCGCCg -3'
miRNA:   3'- uCCCGG-----CGCCG-GAGCGCC--UGA---------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 35956 0.66 0.33815
Target:  5'- uGGGacuCCGCGGCCcggugucaUCGCGuACUggACCa -3'
miRNA:   3'- uCCC---GGCGCCGG--------AGCGCcUGAagUGG- -5'
11532 3' -62 NC_003085.1 + 36761 0.67 0.312242
Target:  5'- -cGGCCGcCGGCCUCGCcgucGGCguacuccucggcgUCAUCa -3'
miRNA:   3'- ucCCGGC-GCCGGAGCGc---CUGa------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 38197 0.66 0.370585
Target:  5'- cAGGGCgGCGaGCCUCaCGG----CACCu -3'
miRNA:   3'- -UCCCGgCGC-CGGAGcGCCugaaGUGG- -5'
11532 3' -62 NC_003085.1 + 39257 0.68 0.286482
Target:  5'- uGGGCCgcagcaugugcuGCGcGCCUCcucuacggcgcuGCGGugUcUCGCCa -3'
miRNA:   3'- uCCCGG------------CGC-CGGAG------------CGCCugA-AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.