miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 5' -57.4 NC_003085.1 + 31989 0.66 0.614775
Target:  5'- cGGGCUGCUgcucccgugCCUC--GUCCGCCuCGu -3'
miRNA:   3'- uCCUGAUGGa--------GGAGuuCAGGCGG-GCc -5'
11532 5' -57.4 NC_003085.1 + 6617 0.66 0.593133
Target:  5'- gGGGG-----UCCUCAAGUCCGgCgCCGGa -3'
miRNA:   3'- -UCCUgauggAGGAGUUCAGGC-G-GGCC- -5'
11532 5' -57.4 NC_003085.1 + 16526 0.66 0.582356
Target:  5'- cGGACacUGCCgucgCCUCGAaugacGUCggCGCCUGGa -3'
miRNA:   3'- uCCUG--AUGGa---GGAGUU-----CAG--GCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 2153 0.67 0.539727
Target:  5'- cGGcGGCUGCgCUCgUCGcGUcaCCGUCCGGg -3'
miRNA:   3'- -UC-CUGAUG-GAGgAGUuCA--GGCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 43736 0.67 0.518802
Target:  5'- cGGGAC-ACCcgagCCg--GGUCCGCCcCGGu -3'
miRNA:   3'- -UCCUGaUGGa---GGaguUCAGGCGG-GCC- -5'
11532 5' -57.4 NC_003085.1 + 780 0.67 0.518802
Target:  5'- cGGGuggACCUgCUCAGGcCgCGCCCGa -3'
miRNA:   3'- -UCCugaUGGAgGAGUUCaG-GCGGGCc -5'
11532 5' -57.4 NC_003085.1 + 39824 0.67 0.50846
Target:  5'- cGGAUgAgCUCCUCAcGGUCCuUCCGGc -3'
miRNA:   3'- uCCUGaUgGAGGAGU-UCAGGcGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 5064 0.67 0.507431
Target:  5'- gAGGGCUGCCgCCUCA-GUCugagugagcaccuCGUCCGu -3'
miRNA:   3'- -UCCUGAUGGaGGAGUuCAG-------------GCGGGCc -5'
11532 5' -57.4 NC_003085.1 + 2141 0.67 0.498206
Target:  5'- gAGGACggcgGCCcccgCCUCAugacGUCCGUgCUGGa -3'
miRNA:   3'- -UCCUGa---UGGa---GGAGUu---CAGGCG-GGCC- -5'
11532 5' -57.4 NC_003085.1 + 10276 0.68 0.46407
Target:  5'- -uGGCgGCCUCCcgcgggugagcaggUCGcgcauugcagccgGGUCCGCCCGGu -3'
miRNA:   3'- ucCUGaUGGAGG--------------AGU-------------UCAGGCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 33423 0.68 0.43881
Target:  5'- aAGGGCgACaUCCUgGAGgucgaCGCCCGGa -3'
miRNA:   3'- -UCCUGaUGgAGGAgUUCag---GCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 32839 0.69 0.410666
Target:  5'- uGGGGCccgagagGCCgcgcgCCgCGGGaCCGCCCGGg -3'
miRNA:   3'- -UCCUGa------UGGa----GGaGUUCaGGCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 631 0.69 0.401537
Target:  5'- gAGGcugGCgcggACCUCgUCGAGgcgcucgagcaCCGCCCGGa -3'
miRNA:   3'- -UCC---UGa---UGGAGgAGUUCa----------GGCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 19898 0.7 0.383671
Target:  5'- aAGGGCUACCgcuaCCUCAAgcacGUCCugccgcacgacGCCCGc -3'
miRNA:   3'- -UCCUGAUGGa---GGAGUU----CAGG-----------CGGGCc -5'
11532 5' -57.4 NC_003085.1 + 29344 0.7 0.366341
Target:  5'- cGGGGCagGCCgUCUUCAaccAGgacauggCCGCCCGGc -3'
miRNA:   3'- -UCCUGa-UGG-AGGAGU---UCa------GGCGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 48141 0.7 0.35788
Target:  5'- uGGGCUGCCUCCUCcagcgcggcGUCgCGCUCa- -3'
miRNA:   3'- uCCUGAUGGAGGAGuu-------CAG-GCGGGcc -5'
11532 5' -57.4 NC_003085.1 + 42032 0.7 0.34463
Target:  5'- gAGGGC-GCCUUCUCuccagccggguagcAGUCCGCgCGGa -3'
miRNA:   3'- -UCCUGaUGGAGGAGu-------------UCAGGCGgGCC- -5'
11532 5' -57.4 NC_003085.1 + 22432 0.71 0.325424
Target:  5'- cGGACUACCagUCCgUCGAGgagcgCCaGCCCGu -3'
miRNA:   3'- uCCUGAUGG--AGG-AGUUCa----GG-CGGGCc -5'
11532 5' -57.4 NC_003085.1 + 45430 0.72 0.254048
Target:  5'- gAGcGACaGCCUCUuccuUCGAGUCgaaGCCCGGg -3'
miRNA:   3'- -UC-CUGaUGGAGG----AGUUCAGg--CGGGCC- -5'
11532 5' -57.4 NC_003085.1 + 9005 1.09 0.000563
Target:  5'- gAGGACUACCUCCUCAAGUCCGCCCGGc -3'
miRNA:   3'- -UCCUGAUGGAGGAGUUCAGGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.