miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11534 3' -50.8 NC_003085.1 + 17966 0.66 0.925285
Target:  5'- aCCUgaaGCGCCGGCagcgcgggcCGCAgGGCACGg-- -3'
miRNA:   3'- -GGA---UGCGGCUGa--------GUGUgCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 17928 0.66 0.925285
Target:  5'- gCCUGCGCCca---GCGCGGCGCucUGg -3'
miRNA:   3'- -GGAUGCGGcugagUGUGCUGUGuaAC- -5'
11534 3' -50.8 NC_003085.1 + 10450 0.66 0.919171
Target:  5'- ----aGUCGGCUC-CGCGGCGCuUUGg -3'
miRNA:   3'- ggaugCGGCUGAGuGUGCUGUGuAAC- -5'
11534 3' -50.8 NC_003085.1 + 44778 0.66 0.919171
Target:  5'- ---cCGCCGACgaggCGCAacuCGGCGCcgUGa -3'
miRNA:   3'- ggauGCGGCUGa---GUGU---GCUGUGuaAC- -5'
11534 3' -50.8 NC_003085.1 + 8489 0.66 0.919171
Target:  5'- gCCgagGCGCUGGCcCGCcaguACGACGCGc-- -3'
miRNA:   3'- -GGa--UGCGGCUGaGUG----UGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 15282 0.66 0.919171
Target:  5'- aCCU-CGCCcACUUcCGCGGCGCGg-- -3'
miRNA:   3'- -GGAuGCGGcUGAGuGUGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 41913 0.66 0.919171
Target:  5'- aCCaGCGCCgggcggGACUCAUggGGCGC-UUGg -3'
miRNA:   3'- -GGaUGCGG------CUGAGUGugCUGUGuAAC- -5'
11534 3' -50.8 NC_003085.1 + 20682 0.66 0.912766
Target:  5'- --aGCGCCGGCUgACGCu-CACcUUGg -3'
miRNA:   3'- ggaUGCGGCUGAgUGUGcuGUGuAAC- -5'
11534 3' -50.8 NC_003085.1 + 2449 0.66 0.912766
Target:  5'- aCCUGCGagaGCUCGCGCGcCGCGg-- -3'
miRNA:   3'- -GGAUGCggcUGAGUGUGCuGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 23717 0.66 0.912766
Target:  5'- gCCUGCGCgGccuGCUCGCGCuGCugAa-- -3'
miRNA:   3'- -GGAUGCGgC---UGAGUGUGcUGugUaac -5'
11534 3' -50.8 NC_003085.1 + 27200 0.66 0.899087
Target:  5'- aCCUGCGUgGGCgUCuGCgACGACGCGg-- -3'
miRNA:   3'- -GGAUGCGgCUG-AG-UG-UGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 32284 0.67 0.891819
Target:  5'- cUCUGgGCgGugUUGCGCagGGCGCGUUGa -3'
miRNA:   3'- -GGAUgCGgCugAGUGUG--CUGUGUAAC- -5'
11534 3' -50.8 NC_003085.1 + 49368 0.67 0.891819
Target:  5'- cCCgggACGCCGAC----GCGACGCAg-- -3'
miRNA:   3'- -GGa--UGCGGCUGagugUGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 10621 0.67 0.891819
Target:  5'- uCUUGCGCCGccACUCGCGCuccaGCACu--- -3'
miRNA:   3'- -GGAUGCGGC--UGAGUGUGc---UGUGuaac -5'
11534 3' -50.8 NC_003085.1 + 39293 0.67 0.884273
Target:  5'- gCUGCGgUGuCUCGCcaacuACGACGCAUUc -3'
miRNA:   3'- gGAUGCgGCuGAGUG-----UGCUGUGUAAc -5'
11534 3' -50.8 NC_003085.1 + 41052 0.67 0.884273
Target:  5'- gCUugGCgGGCUgcUACGCGACugGg-- -3'
miRNA:   3'- gGAugCGgCUGA--GUGUGCUGugUaac -5'
11534 3' -50.8 NC_003085.1 + 26569 0.67 0.884273
Target:  5'- gCCgaACGCCGACgCACcggaguccggcgGCGACACGc-- -3'
miRNA:   3'- -GGa-UGCGGCUGaGUG------------UGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 434 0.67 0.876454
Target:  5'- gCC-GCGUcuaCGAgUCACACGGCGCGg-- -3'
miRNA:   3'- -GGaUGCG---GCUgAGUGUGCUGUGUaac -5'
11534 3' -50.8 NC_003085.1 + 40798 0.67 0.876454
Target:  5'- gCCUccgGCGCCGGCgagaggucCAC-CGGCGCGUc- -3'
miRNA:   3'- -GGA---UGCGGCUGa-------GUGuGCUGUGUAac -5'
11534 3' -50.8 NC_003085.1 + 40659 0.67 0.875657
Target:  5'- gCUGCGCCGcgcaacCUCGCGgagccgcCGGCGCAggGg -3'
miRNA:   3'- gGAUGCGGCu-----GAGUGU-------GCUGUGUaaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.