miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11534 5' -56 NC_003085.1 + 32033 0.66 0.650947
Target:  5'- aCCg--GCGCgGUGaUGGGGgcggCGAGUGg -3'
miRNA:   3'- aGGaaaCGCGgUAC-GCUCCa---GCUCGC- -5'
11534 5' -56 NC_003085.1 + 37970 0.66 0.639894
Target:  5'- aUCUggUGCGCCAUGUcAGcGUCugcGGCGg -3'
miRNA:   3'- -AGGaaACGCGGUACGcUC-CAGc--UCGC- -5'
11534 5' -56 NC_003085.1 + 17312 0.66 0.617775
Target:  5'- gCCg-UGCGCgGUGCGcGaGUCGcAGCGa -3'
miRNA:   3'- aGGaaACGCGgUACGCuC-CAGC-UCGC- -5'
11534 5' -56 NC_003085.1 + 16566 0.67 0.595707
Target:  5'- uUCCUcgGCGCCGUcaGCGAcGGgaaGGCGg -3'
miRNA:   3'- -AGGAaaCGCGGUA--CGCU-CCagcUCGC- -5'
11534 5' -56 NC_003085.1 + 15963 0.68 0.541231
Target:  5'- cUCCcUUG-GCCGcUGgGAGGUgGGGCGu -3'
miRNA:   3'- -AGGaAACgCGGU-ACgCUCCAgCUCGC- -5'
11534 5' -56 NC_003085.1 + 23805 0.68 0.541231
Target:  5'- gUCCUUcgGCGCCAcgGUGGGGgccgGGGCc -3'
miRNA:   3'- -AGGAAa-CGCGGUa-CGCUCCag--CUCGc -5'
11534 5' -56 NC_003085.1 + 37419 0.68 0.519886
Target:  5'- aCCgaUGCGCCAgUGCGGcuagCGAGCGc -3'
miRNA:   3'- aGGaaACGCGGU-ACGCUcca-GCUCGC- -5'
11534 5' -56 NC_003085.1 + 40391 0.68 0.519886
Target:  5'- -----cGCGCCAgcccuugccgGCGAGGUagaGGGCGa -3'
miRNA:   3'- aggaaaCGCGGUa---------CGCUCCAg--CUCGC- -5'
11534 5' -56 NC_003085.1 + 31446 0.68 0.509337
Target:  5'- cUCUUUGCGgC---CGGGGUCGAGCu -3'
miRNA:   3'- aGGAAACGCgGuacGCUCCAGCUCGc -5'
11534 5' -56 NC_003085.1 + 10451 0.68 0.498879
Target:  5'- cUCCUUcGCGgUAgucaGCGGGGUUGAGgGa -3'
miRNA:   3'- -AGGAAaCGCgGUa---CGCUCCAGCUCgC- -5'
11534 5' -56 NC_003085.1 + 31081 0.69 0.458068
Target:  5'- cCCUcacgGCGCU-UGUuGGGUCGAGCGu -3'
miRNA:   3'- aGGAaa--CGCGGuACGcUCCAGCUCGC- -5'
11534 5' -56 NC_003085.1 + 30753 0.7 0.428662
Target:  5'- cUCCUcaGCaGCCaAUGCGAGGcgcaGAGCGc -3'
miRNA:   3'- -AGGAaaCG-CGG-UACGCUCCag--CUCGC- -5'
11534 5' -56 NC_003085.1 + 2354 0.7 0.41911
Target:  5'- aUCCgggagGCGCaGUGCGAGGcCGcGGCGc -3'
miRNA:   3'- -AGGaaa--CGCGgUACGCUCCaGC-UCGC- -5'
11534 5' -56 NC_003085.1 + 43585 0.71 0.347575
Target:  5'- cCCg--GCGCCAcgGCaGAGGUCGcaGGCGc -3'
miRNA:   3'- aGGaaaCGCGGUa-CG-CUCCAGC--UCGC- -5'
11534 5' -56 NC_003085.1 + 40748 0.71 0.33927
Target:  5'- gUCCcccUGCGCCGgcggcuccGCGAGGUUGcGCGg -3'
miRNA:   3'- -AGGaa-ACGCGGUa-------CGCUCCAGCuCGC- -5'
11534 5' -56 NC_003085.1 + 47848 0.74 0.225976
Target:  5'- gUCC---GCGUCAUccgggGUGAGGUCGAGCGa -3'
miRNA:   3'- -AGGaaaCGCGGUA-----CGCUCCAGCUCGC- -5'
11534 5' -56 NC_003085.1 + 10032 1.08 0.000796
Target:  5'- gUCCUUUGCGCCAUGCGAGGUCGAGCGc -3'
miRNA:   3'- -AGGAAACGCGGUACGCUCCAGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.