miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11535 3' -56.9 NC_003085.1 + 27265 0.66 0.603459
Target:  5'- gCUGCGugacgaAUGCGUGagagacgccgaaGCCaGCgUCGCCCGUc -3'
miRNA:   3'- -GACGU------UACGCGC------------UGGaCG-AGUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 34548 0.66 0.603459
Target:  5'- -cGCGA-GCGCcACCaGCcgGCCCGCg -3'
miRNA:   3'- gaCGUUaCGCGcUGGaCGagUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 6780 0.66 0.603459
Target:  5'- -gGCGAgagcccuucCGCuACCUGaguCUCACCCGCa -3'
miRNA:   3'- gaCGUUac-------GCGcUGGAC---GAGUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 45629 0.66 0.581525
Target:  5'- -cGCGcUGCGCGaggaguugacacGCCagGCUCGCgUCGCg -3'
miRNA:   3'- gaCGUuACGCGC------------UGGa-CGAGUG-GGCG- -5'
11535 3' -56.9 NC_003085.1 + 32912 0.66 0.581525
Target:  5'- -cGCGGcGCGCGGCCU-CUCggGCCC-Ca -3'
miRNA:   3'- gaCGUUaCGCGCUGGAcGAG--UGGGcG- -5'
11535 3' -56.9 NC_003085.1 + 2448 0.66 0.581525
Target:  5'- cCUGCGAgagcucGCGCG-CCgcgGcCUCGCaCUGCg -3'
miRNA:   3'- -GACGUUa-----CGCGCuGGa--C-GAGUG-GGCG- -5'
11535 3' -56.9 NC_003085.1 + 40659 0.66 0.570618
Target:  5'- gCUGCGccGCGCaACCUcGCggagcCGCCgGCg -3'
miRNA:   3'- -GACGUuaCGCGcUGGA-CGa----GUGGgCG- -5'
11535 3' -56.9 NC_003085.1 + 46344 0.66 0.558678
Target:  5'- aCUGCcggacgaGAUG-GCGGCaaGUUCAUCCGCc -3'
miRNA:   3'- -GACG-------UUACgCGCUGgaCGAGUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 19074 0.66 0.548962
Target:  5'- -aGCAG-GCGCcgGGCCcggacggagUGCgccgCACCCGCu -3'
miRNA:   3'- gaCGUUaCGCG--CUGG---------ACGa---GUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 36981 0.66 0.548962
Target:  5'- -gGCGAUGUccuggaGCGugCUGUUgGCCCa- -3'
miRNA:   3'- gaCGUUACG------CGCugGACGAgUGGGcg -5'
11535 3' -56.9 NC_003085.1 + 5803 0.66 0.548962
Target:  5'- --uCAGUGCGaCGACCU-Cg-GCCCGCg -3'
miRNA:   3'- gacGUUACGC-GCUGGAcGagUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 45736 0.67 0.538228
Target:  5'- cCUGCGcggGUGCuGCCUGCgucgUCACCaccaGCa -3'
miRNA:   3'- -GACGUua-CGCGcUGGACG----AGUGGg---CG- -5'
11535 3' -56.9 NC_003085.1 + 1560 0.67 0.538228
Target:  5'- -gGCcGUGCGCGucGCCUGCagUugCgGCg -3'
miRNA:   3'- gaCGuUACGCGC--UGGACGa-GugGgCG- -5'
11535 3' -56.9 NC_003085.1 + 10700 0.67 0.538228
Target:  5'- cCUGC---GCGCGGCCcGCgaggCACUgGCu -3'
miRNA:   3'- -GACGuuaCGCGCUGGaCGa---GUGGgCG- -5'
11535 3' -56.9 NC_003085.1 + 5219 0.67 0.535022
Target:  5'- gCUGCcuucGCGuCGGCCUccucuucgggcguaGCcuUCGCCCGCg -3'
miRNA:   3'- -GACGuua-CGC-GCUGGA--------------CG--AGUGGGCG- -5'
11535 3' -56.9 NC_003085.1 + 27618 0.67 0.527568
Target:  5'- -cGCGGUGUGUGgaGCCUgggggGCUCGCCgccaGCg -3'
miRNA:   3'- gaCGUUACGCGC--UGGA-----CGAGUGGg---CG- -5'
11535 3' -56.9 NC_003085.1 + 22207 0.67 0.516988
Target:  5'- gUGCA--GgGCGACCUGCUgcgCAUCCa- -3'
miRNA:   3'- gACGUuaCgCGCUGGACGA---GUGGGcg -5'
11535 3' -56.9 NC_003085.1 + 12904 0.67 0.506493
Target:  5'- gUGCAAUG-GCGACCccGC-CACggCCGCc -3'
miRNA:   3'- gACGUUACgCGCUGGa-CGaGUG--GGCG- -5'
11535 3' -56.9 NC_003085.1 + 771 0.67 0.506493
Target:  5'- -cGCAGuUGCuuGCGGCCUGCUgCugUgGCc -3'
miRNA:   3'- gaCGUU-ACG--CGCUGGACGA-GugGgCG- -5'
11535 3' -56.9 NC_003085.1 + 36270 0.67 0.506493
Target:  5'- -gGCGAUGUcuugaGCGACaaaccacgGCUCuCCCGCc -3'
miRNA:   3'- gaCGUUACG-----CGCUGga------CGAGuGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.