miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11536 5' -58.6 NC_003085.1 + 8966 0.66 0.5141
Target:  5'- gGCCUugguGGcGGUGCGCaUGCCagacGCGGUg -3'
miRNA:   3'- -CGGGuu--CCaCCACGUG-AUGG----CGCCGu -5'
11536 5' -58.6 NC_003085.1 + 13843 0.66 0.5141
Target:  5'- cGCCCAGGGaaGUGC-CggaugUGCGGCAa -3'
miRNA:   3'- -CGGGUUCCacCACGuGaug--GCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 41636 0.66 0.5141
Target:  5'- gGCCCAGgcuuGGccgccgcucaccUGGUGCugUGCCuuGGCc -3'
miRNA:   3'- -CGGGUU----CC------------ACCACGugAUGGcgCCGu -5'
11536 5' -58.6 NC_003085.1 + 26401 0.66 0.51202
Target:  5'- cGCCCAGGGcUGGcaguugcuccagGUGCUGacguCCGCuGGCAc -3'
miRNA:   3'- -CGGGUUCC-ACCa-----------CGUGAU----GGCG-CCGU- -5'
11536 5' -58.6 NC_003085.1 + 12881 0.66 0.503739
Target:  5'- cGCCCGgaccgucagGGcGUGGaGCAcCUGCCcgacaacgGCGGCAg -3'
miRNA:   3'- -CGGGU---------UC-CACCaCGU-GAUGG--------CGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 41580 0.66 0.497567
Target:  5'- cGCCCGguagccgaugaagucGGGccGGUagcaGCGCUGgCGCGGUAc -3'
miRNA:   3'- -CGGGU---------------UCCa-CCA----CGUGAUgGCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 5651 0.66 0.49347
Target:  5'- cGCaCCAGGGcguagacgUGGcGCACcgUCGCGGCGc -3'
miRNA:   3'- -CG-GGUUCC--------ACCaCGUGauGGCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 41204 0.66 0.49347
Target:  5'- cGCCCGAGGcGuUGgACUGCUcUGGCAc -3'
miRNA:   3'- -CGGGUUCCaCcACgUGAUGGcGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 40659 0.66 0.49347
Target:  5'- cGCCCGGucGGcaaUGcUGCACUugggguccACCGCGGCc -3'
miRNA:   3'- -CGGGUU--CC---ACcACGUGA--------UGGCGCCGu -5'
11536 5' -58.6 NC_003085.1 + 28118 0.66 0.483298
Target:  5'- cGCCagAAGcaGGUGCAgUUGCUGCGGCc -3'
miRNA:   3'- -CGGg-UUCcaCCACGU-GAUGGCGCCGu -5'
11536 5' -58.6 NC_003085.1 + 20121 0.67 0.453413
Target:  5'- cGCUCcAGGaGG-GCGCggGCgGCGGCAa -3'
miRNA:   3'- -CGGGuUCCaCCaCGUGa-UGgCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 21876 0.67 0.434057
Target:  5'- aGCCCGAGGccGUGUcccuccaggACU-UCGCGGCGc -3'
miRNA:   3'- -CGGGUUCCacCACG---------UGAuGGCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 18291 0.67 0.424561
Target:  5'- aGCCaCcGGGcGGUGCAC-GCCcCGGCGc -3'
miRNA:   3'- -CGG-GuUCCaCCACGUGaUGGcGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 44310 0.67 0.415189
Target:  5'- cGCCgCGAGGUGuUGCGacauggaUGCCuggGCGGCGa -3'
miRNA:   3'- -CGG-GUUCCACcACGUg------AUGG---CGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 27075 0.67 0.405946
Target:  5'- -aCCAAGGcccGUGCACcACuCGCGGUAg -3'
miRNA:   3'- cgGGUUCCac-CACGUGaUG-GCGCCGU- -5'
11536 5' -58.6 NC_003085.1 + 7871 0.68 0.396833
Target:  5'- cGCCCAAGGg---GCAUcugACCGUGGgCAu -3'
miRNA:   3'- -CGGGUUCCaccaCGUGa--UGGCGCC-GU- -5'
11536 5' -58.6 NC_003085.1 + 36957 0.68 0.394125
Target:  5'- gGCCCAGgugcugcugauGGUGGUGC-CggacaccaccggguUGCCGCcaGGCAg -3'
miRNA:   3'- -CGGGUU-----------CCACCACGuG--------------AUGGCG--CCGU- -5'
11536 5' -58.6 NC_003085.1 + 38055 0.68 0.379008
Target:  5'- cGCCCGAcauguGGUGGUGCG---UCGCGGa- -3'
miRNA:   3'- -CGGGUU-----CCACCACGUgauGGCGCCgu -5'
11536 5' -58.6 NC_003085.1 + 20608 0.68 0.379008
Target:  5'- cGCCCAAGGUGaGcgucagccgGCGCU-UCGCGGaCGc -3'
miRNA:   3'- -CGGGUUCCAC-Ca--------CGUGAuGGCGCC-GU- -5'
11536 5' -58.6 NC_003085.1 + 38248 0.68 0.361727
Target:  5'- aGCCCAGGGgaa--CACcugcGCCGCGGCGg -3'
miRNA:   3'- -CGGGUUCCaccacGUGa---UGGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.