miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11538 3' -52.3 NC_003085.1 + 19461 0.67 0.743025
Target:  5'- -uGCugGGGUACcgGCccACGCGgCUGCACa -3'
miRNA:   3'- uuUGugCCUAUGa-CG--UGCGU-GGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 8126 0.67 0.743025
Target:  5'- uGAugACGuGGUGgacCUGCucaaGCGCCGCGCa -3'
miRNA:   3'- -UUugUGC-CUAU---GACGug--CGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 26776 0.67 0.732024
Target:  5'- cAAC-CGGAUGCUGgACuGCGCCA-ACg -3'
miRNA:   3'- uUUGuGCCUAUGACgUG-CGUGGUgUG- -5'
11538 3' -52.3 NC_003085.1 + 30877 0.68 0.709706
Target:  5'- --cCGCGGugauUGCUGCGgCGCGCuCACGg -3'
miRNA:   3'- uuuGUGCCu---AUGACGU-GCGUG-GUGUg -5'
11538 3' -52.3 NC_003085.1 + 4147 0.68 0.709706
Target:  5'- --cUACGGAgcgACUGCugGCGCaacucCGCg -3'
miRNA:   3'- uuuGUGCCUa--UGACGugCGUGgu---GUG- -5'
11538 3' -52.3 NC_003085.1 + 17921 0.68 0.687055
Target:  5'- ---gACGGGUGcCUGCGCccaGCGCgGCGCu -3'
miRNA:   3'- uuugUGCCUAU-GACGUG---CGUGgUGUG- -5'
11538 3' -52.3 NC_003085.1 + 47562 0.68 0.687055
Target:  5'- cGGACACGGA-ACgcgGCA-GCGCCAUAa -3'
miRNA:   3'- -UUUGUGCCUaUGa--CGUgCGUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 23769 0.68 0.687055
Target:  5'- ---gACGGAggaggcUGCUGCGCGgGCC-CGCu -3'
miRNA:   3'- uuugUGCCU------AUGACGUGCgUGGuGUG- -5'
11538 3' -52.3 NC_003085.1 + 3063 0.68 0.675635
Target:  5'- cAGCGgGGAgcgguucccACUGCGCGCucgacgaaaccACCGCGCg -3'
miRNA:   3'- uUUGUgCCUa--------UGACGUGCG-----------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 3694 0.68 0.664171
Target:  5'- --gUugGGAUGCgGCcacgcagcgcgACGUGCCACGCg -3'
miRNA:   3'- uuuGugCCUAUGaCG-----------UGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 6015 0.69 0.652674
Target:  5'- uGGGCGCGGA---UGUACGCccggacGCCGCGCc -3'
miRNA:   3'- -UUUGUGCCUaugACGUGCG------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12277 0.69 0.641156
Target:  5'- -uGCAUGGA-ACUcGCACGCgACgGCGCg -3'
miRNA:   3'- uuUGUGCCUaUGA-CGUGCG-UGgUGUG- -5'
11538 3' -52.3 NC_003085.1 + 36996 0.69 0.641156
Target:  5'- cAGCA-GGGcACUGCugGCGCCccaGCGCu -3'
miRNA:   3'- uUUGUgCCUaUGACGugCGUGG---UGUG- -5'
11538 3' -52.3 NC_003085.1 + 38742 0.69 0.62963
Target:  5'- cAGCGCGG---CUGUAgGCACCACGg -3'
miRNA:   3'- uUUGUGCCuauGACGUgCGUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 48889 0.69 0.618105
Target:  5'- -cACACGGAgcAUUGCcCGCcaGCCGCGCc -3'
miRNA:   3'- uuUGUGCCUa-UGACGuGCG--UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 37165 0.69 0.601997
Target:  5'- uGAACugGaGcgACUGCGCGCcguccaccugcauCCGCACg -3'
miRNA:   3'- -UUUGugC-CuaUGACGUGCGu------------GGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 29200 0.69 0.595108
Target:  5'- aGGACGCGGA-GC-GCACGCGCC-UGCu -3'
miRNA:   3'- -UUUGUGCCUaUGaCGUGCGUGGuGUG- -5'
11538 3' -52.3 NC_003085.1 + 42822 0.7 0.583656
Target:  5'- -uGCACGGGUccgGC-GCugGCGgCGCGCg -3'
miRNA:   3'- uuUGUGCCUA---UGaCGugCGUgGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12335 0.7 0.583656
Target:  5'- cGAACcUGGGcaaggGCACGCGCCACAUg -3'
miRNA:   3'- -UUUGuGCCUauga-CGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 3409 0.7 0.572248
Target:  5'- gAAGgGCGGGUGCaGC-CGUAUCGCGCc -3'
miRNA:   3'- -UUUgUGCCUAUGaCGuGCGUGGUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.