Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11539 | 3' | -58.8 | NC_003085.1 | + | 12503 | 1.08 | 0.000424 |
Target: 5'- gAGGGAGCACUACAGCAGCCUCCACCGc -3' miRNA: 3'- -UCCCUCGUGAUGUCGUCGGAGGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 5701 | 0.83 | 0.032195 |
Target: 5'- aGGGcGAGCGCUcCAGCAGCCcgUCCACCa -3' miRNA: 3'- -UCC-CUCGUGAuGUCGUCGG--AGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 22985 | 0.8 | 0.052838 |
Target: 5'- -cGGAGgGCUucgcccCGGCAGCCUCCGCCGg -3' miRNA: 3'- ucCCUCgUGAu-----GUCGUCGGAGGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 41194 | 0.74 | 0.134976 |
Target: 5'- cGGGGugccGCGCU-CGGCcugGGCCUCCACCc -3' miRNA: 3'- -UCCCu---CGUGAuGUCG---UCGGAGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 33184 | 0.73 | 0.162227 |
Target: 5'- uAGGGAGCGuucgACAGCgccacccaggagugAGCCUCCGCgGg -3' miRNA: 3'- -UCCCUCGUga--UGUCG--------------UCGGAGGUGgC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 23695 | 0.73 | 0.172671 |
Target: 5'- cGGGccCGC-GCAGCAGCCUCCuCCGu -3' miRNA: 3'- uCCCucGUGaUGUCGUCGGAGGuGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 12485 | 0.73 | 0.172671 |
Target: 5'- -cGGAGC---GCAGCGGCC-CCGCCGg -3' miRNA: 3'- ucCCUCGugaUGUCGUCGGaGGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 2457 | 0.72 | 0.180773 |
Target: 5'- aAGGGAGUAcCUGCGagagcucgcgcgccGCGGCCUCgCACUGc -3' miRNA: 3'- -UCCCUCGU-GAUGU--------------CGUCGGAG-GUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 29505 | 0.72 | 0.197464 |
Target: 5'- gAGGaAGCcUUGCAGCgccugAGCCUCCGCCa -3' miRNA: 3'- -UCCcUCGuGAUGUCG-----UCGGAGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 44020 | 0.72 | 0.20332 |
Target: 5'- gAGGGAGCACgugaacgaggacacaACGGCGGCggCCAuCCGg -3' miRNA: 3'- -UCCCUCGUGa--------------UGUCGUCGgaGGU-GGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 30353 | 0.71 | 0.213789 |
Target: 5'- cGGGGcGCACUGCGGCGucuagcaucccGCCcgggCCAUCGg -3' miRNA: 3'- -UCCCuCGUGAUGUCGU-----------CGGa---GGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 14360 | 0.71 | 0.219483 |
Target: 5'- gAGGGcugcgcGGCGCUugacgGCAGCAGCCUggCCGCaCGu -3' miRNA: 3'- -UCCC------UCGUGA-----UGUCGUCGGA--GGUG-GC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 22053 | 0.71 | 0.219483 |
Target: 5'- aAGGGAGCGCUGCcgGGCaccugcugAGCCaacggagCCACCc -3' miRNA: 3'- -UCCCUCGUGAUG--UCG--------UCGGa------GGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 23879 | 0.71 | 0.225306 |
Target: 5'- cGGGGcgugAGCGaacgGCAGCAGCCgUCCACgCGc -3' miRNA: 3'- -UCCC----UCGUga--UGUCGUCGG-AGGUG-GC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 36104 | 0.7 | 0.249918 |
Target: 5'- cGGGGGCA-UACGGCGuGCCcauggCCGCCa -3' miRNA: 3'- uCCCUCGUgAUGUCGU-CGGa----GGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 16017 | 0.7 | 0.269802 |
Target: 5'- gAGGGAGCGCcacCAGCcgAGCCUgucacaCGCCGu -3' miRNA: 3'- -UCCCUCGUGau-GUCG--UCGGAg-----GUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 22801 | 0.7 | 0.283754 |
Target: 5'- -cGGAGCcgaguGCUucuCGGCAGCCgCCGCCa -3' miRNA: 3'- ucCCUCG-----UGAu--GUCGUCGGaGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 11617 | 0.7 | 0.283754 |
Target: 5'- aAGGG-GCugUGCAGgGGCUgCUACCa -3' miRNA: 3'- -UCCCuCGugAUGUCgUCGGaGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 29821 | 0.69 | 0.290941 |
Target: 5'- aGGuGGGGCGCgACGGCGGCCacgUCCugggcgacgacGCCGa -3' miRNA: 3'- -UC-CCUCGUGaUGUCGUCGG---AGG-----------UGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 25365 | 0.69 | 0.290941 |
Target: 5'- cGGugacGGGCACgccgACGGCGGgCUUCACCGu -3' miRNA: 3'- uCC----CUCGUGa---UGUCGUCgGAGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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