miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 3' -58.8 NC_003085.1 + 18728 0.69 0.305741
Target:  5'- cGGGAcGCGCcuuccugcGCAGCAuGCCgaagCCGCCGc -3'
miRNA:   3'- uCCCU-CGUGa-------UGUCGU-CGGa---GGUGGC- -5'
11539 3' -58.8 NC_003085.1 + 22859 0.69 0.29827
Target:  5'- cGGGAGCGgccgUUGCcGCuGCCgucgCCACCGc -3'
miRNA:   3'- uCCCUCGU----GAUGuCGuCGGa---GGUGGC- -5'
11539 3' -58.8 NC_003085.1 + 29821 0.69 0.290941
Target:  5'- aGGuGGGGCGCgACGGCGGCCacgUCCugggcgacgacGCCGa -3'
miRNA:   3'- -UC-CCUCGUGaUGUCGUCGG---AGG-----------UGGC- -5'
11539 3' -58.8 NC_003085.1 + 25365 0.69 0.290941
Target:  5'- cGGugacGGGCACgccgACGGCGGgCUUCACCGu -3'
miRNA:   3'- uCC----CUCGUGa---UGUCGUCgGAGGUGGC- -5'
11539 3' -58.8 NC_003085.1 + 11617 0.7 0.283754
Target:  5'- aAGGG-GCugUGCAGgGGCUgCUACCa -3'
miRNA:   3'- -UCCCuCGugAUGUCgUCGGaGGUGGc -5'
11539 3' -58.8 NC_003085.1 + 22801 0.7 0.283754
Target:  5'- -cGGAGCcgaguGCUucuCGGCAGCCgCCGCCa -3'
miRNA:   3'- ucCCUCG-----UGAu--GUCGUCGGaGGUGGc -5'
11539 3' -58.8 NC_003085.1 + 16017 0.7 0.269802
Target:  5'- gAGGGAGCGCcacCAGCcgAGCCUgucacaCGCCGu -3'
miRNA:   3'- -UCCCUCGUGau-GUCG--UCGGAg-----GUGGC- -5'
11539 3' -58.8 NC_003085.1 + 36104 0.7 0.249918
Target:  5'- cGGGGGCA-UACGGCGuGCCcauggCCGCCa -3'
miRNA:   3'- uCCCUCGUgAUGUCGU-CGGa----GGUGGc -5'
11539 3' -58.8 NC_003085.1 + 23879 0.71 0.225306
Target:  5'- cGGGGcgugAGCGaacgGCAGCAGCCgUCCACgCGc -3'
miRNA:   3'- -UCCC----UCGUga--UGUCGUCGG-AGGUG-GC- -5'
11539 3' -58.8 NC_003085.1 + 14360 0.71 0.219483
Target:  5'- gAGGGcugcgcGGCGCUugacgGCAGCAGCCUggCCGCaCGu -3'
miRNA:   3'- -UCCC------UCGUGA-----UGUCGUCGGA--GGUG-GC- -5'
11539 3' -58.8 NC_003085.1 + 22053 0.71 0.219483
Target:  5'- aAGGGAGCGCUGCcgGGCaccugcugAGCCaacggagCCACCc -3'
miRNA:   3'- -UCCCUCGUGAUG--UCG--------UCGGa------GGUGGc -5'
11539 3' -58.8 NC_003085.1 + 30353 0.71 0.213789
Target:  5'- cGGGGcGCACUGCGGCGucuagcaucccGCCcgggCCAUCGg -3'
miRNA:   3'- -UCCCuCGUGAUGUCGU-----------CGGa---GGUGGC- -5'
11539 3' -58.8 NC_003085.1 + 44020 0.72 0.20332
Target:  5'- gAGGGAGCACgugaacgaggacacaACGGCGGCggCCAuCCGg -3'
miRNA:   3'- -UCCCUCGUGa--------------UGUCGUCGgaGGU-GGC- -5'
11539 3' -58.8 NC_003085.1 + 29505 0.72 0.197464
Target:  5'- gAGGaAGCcUUGCAGCgccugAGCCUCCGCCa -3'
miRNA:   3'- -UCCcUCGuGAUGUCG-----UCGGAGGUGGc -5'
11539 3' -58.8 NC_003085.1 + 2457 0.72 0.180773
Target:  5'- aAGGGAGUAcCUGCGagagcucgcgcgccGCGGCCUCgCACUGc -3'
miRNA:   3'- -UCCCUCGU-GAUGU--------------CGUCGGAG-GUGGC- -5'
11539 3' -58.8 NC_003085.1 + 12485 0.73 0.172671
Target:  5'- -cGGAGC---GCAGCGGCC-CCGCCGg -3'
miRNA:   3'- ucCCUCGugaUGUCGUCGGaGGUGGC- -5'
11539 3' -58.8 NC_003085.1 + 23695 0.73 0.172671
Target:  5'- cGGGccCGC-GCAGCAGCCUCCuCCGu -3'
miRNA:   3'- uCCCucGUGaUGUCGUCGGAGGuGGC- -5'
11539 3' -58.8 NC_003085.1 + 33184 0.73 0.162227
Target:  5'- uAGGGAGCGuucgACAGCgccacccaggagugAGCCUCCGCgGg -3'
miRNA:   3'- -UCCCUCGUga--UGUCG--------------UCGGAGGUGgC- -5'
11539 3' -58.8 NC_003085.1 + 41194 0.74 0.134976
Target:  5'- cGGGGugccGCGCU-CGGCcugGGCCUCCACCc -3'
miRNA:   3'- -UCCCu---CGUGAuGUCG---UCGGAGGUGGc -5'
11539 3' -58.8 NC_003085.1 + 22985 0.8 0.052838
Target:  5'- -cGGAGgGCUucgcccCGGCAGCCUCCGCCGg -3'
miRNA:   3'- ucCCUCgUGAu-----GUCGUCGGAGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.