miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 5' -63 NC_003085.1 + 12001 0.67 0.274277
Target:  5'- uGCGGCAGcAGcGGccugacgcugGCgCACCUGCCGg -3'
miRNA:   3'- gCGCCGUC-UC-CCua--------CG-GUGGGCGGCg -5'
11539 5' -63 NC_003085.1 + 12537 1.09 0.000154
Target:  5'- uCGCGGCAGAGGGAUGCCACCCGCCGCc -3'
miRNA:   3'- -GCGCCGUCUCCCUACGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 12615 0.66 0.331705
Target:  5'- aGCGGCGc--GGGUGgCAUCCcucuGCCGCg -3'
miRNA:   3'- gCGCCGUcucCCUACgGUGGG----CGGCG- -5'
11539 5' -63 NC_003085.1 + 12767 0.77 0.050089
Target:  5'- gGUGGCcuGGGGuGAUGCC-CCUGCCGCc -3'
miRNA:   3'- gCGCCGu-CUCC-CUACGGuGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 12842 0.7 0.155418
Target:  5'- gGCGGCAGGGGcaucaccccagGCCACCuCGacaCGCa -3'
miRNA:   3'- gCGCCGUCUCCcua--------CGGUGG-GCg--GCG- -5'
11539 5' -63 NC_003085.1 + 13184 0.66 0.294829
Target:  5'- aGCGGCaccacAGcAGGGAUgGCCAUaCgGUCGCu -3'
miRNA:   3'- gCGCCG-----UC-UCCCUA-CGGUG-GgCGGCG- -5'
11539 5' -63 NC_003085.1 + 15269 0.7 0.174337
Target:  5'- cCGCGGCcGAGc----UCACCCGCCGCg -3'
miRNA:   3'- -GCGCCGuCUCccuacGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 15480 0.66 0.304822
Target:  5'- aCGCGGCGcAGGGGUGCCgugugagugacauugACuuGgCGg -3'
miRNA:   3'- -GCGCCGUcUCCCUACGG---------------UGggCgGCg -5'
11539 5' -63 NC_003085.1 + 15729 0.69 0.18839
Target:  5'- aCGCGGUGGAugGGGAUGaCCcgaaggaugCCGCUGCa -3'
miRNA:   3'- -GCGCCGUCU--CCCUAC-GGug-------GGCGGCG- -5'
11539 5' -63 NC_003085.1 + 16025 0.79 0.034808
Target:  5'- aGCGGcCAGAGGGAgcGCCACCaGCCGa -3'
miRNA:   3'- gCGCC-GUCUCCCUa-CGGUGGgCGGCg -5'
11539 5' -63 NC_003085.1 + 16232 0.66 0.339476
Target:  5'- uCGCGGCu--GGcGucgucauccucGUGCUGCgCCGCCGCc -3'
miRNA:   3'- -GCGCCGucuCC-C-----------UACGGUG-GGCGGCG- -5'
11539 5' -63 NC_003085.1 + 16319 0.66 0.301941
Target:  5'- gGCGGCGGcgcagcacGaGGAUGacgaCGCCaGCCGCg -3'
miRNA:   3'- gCGCCGUCu-------C-CCUACg---GUGGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 17583 0.66 0.294829
Target:  5'- -cCGGCuucGGGGUGacaCGCCUGCUGCu -3'
miRNA:   3'- gcGCCGucuCCCUACg--GUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 17830 0.71 0.149011
Target:  5'- uGCGGCAGgccccuGGGGcaGUGCUgguGCCCGCagGCg -3'
miRNA:   3'- gCGCCGUC------UCCC--UACGG---UGGGCGg-CG- -5'
11539 5' -63 NC_003085.1 + 18083 0.71 0.149011
Target:  5'- aGCGGCAGuGGGAguugGCCuggaAgCgGCUGCg -3'
miRNA:   3'- gCGCCGUCuCCCUa---CGG----UgGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 19065 0.69 0.193291
Target:  5'- gCGCGGCGGAGcaGgcGCCggGCCCggacggagugcGCCGCa -3'
miRNA:   3'- -GCGCCGUCUCc-CuaCGG--UGGG-----------CGGCG- -5'
11539 5' -63 NC_003085.1 + 19889 0.71 0.14513
Target:  5'- uGCGGUAGuGGucgacGAUGuCCACgCCGCCGg -3'
miRNA:   3'- gCGCCGUCuCC-----CUAC-GGUG-GGCGGCg -5'
11539 5' -63 NC_003085.1 + 20432 0.71 0.134035
Target:  5'- aCGCuGGCAgGAGGaGAUGuCCGCCgcgcgcgaGCCGCu -3'
miRNA:   3'- -GCG-CCGU-CUCC-CUAC-GGUGGg-------CGGCG- -5'
11539 5' -63 NC_003085.1 + 22088 0.67 0.254263
Target:  5'- cCGCGGaAGAGGcgcaGAagcagGCCGCCCagcagagcccggcGCCGCa -3'
miRNA:   3'- -GCGCCgUCUCC----CUa----CGGUGGG-------------CGGCG- -5'
11539 5' -63 NC_003085.1 + 22339 0.73 0.110823
Target:  5'- cCGCaGGCcaggaauGGAGGGAUGCCGugaggCGCCGCu -3'
miRNA:   3'- -GCG-CCG-------UCUCCCUACGGUgg---GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.