miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 5' -63 NC_003085.1 + 3107 0.67 0.287848
Target:  5'- gCGCGGCuuGAGGcGAUGCUcgACCUugagaGgCGCg -3'
miRNA:   3'- -GCGCCGu-CUCC-CUACGG--UGGG-----CgGCG- -5'
11539 5' -63 NC_003085.1 + 2035 0.67 0.274277
Target:  5'- aCGCGGCGGAaccugucgguGGcGAaGCCG-CUGCCGUu -3'
miRNA:   3'- -GCGCCGUCU----------CC-CUaCGGUgGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 12001 0.67 0.274277
Target:  5'- uGCGGCAGcAGcGGccugacgcugGCgCACCUGCCGg -3'
miRNA:   3'- gCGCCGUC-UC-CCua--------CG-GUGGGCGGCg -5'
11539 5' -63 NC_003085.1 + 10764 0.67 0.274277
Target:  5'- gGCGccgggaagacGCuGGGGGcAUGCCACCUcuuCCGCg -3'
miRNA:   3'- gCGC----------CGuCUCCC-UACGGUGGGc--GGCG- -5'
11539 5' -63 NC_003085.1 + 37515 0.67 0.267686
Target:  5'- gGUGGCGGGcgcGGGGUuggcGCuCGCuaGCCGCa -3'
miRNA:   3'- gCGCCGUCU---CCCUA----CG-GUGggCGGCG- -5'
11539 5' -63 NC_003085.1 + 36532 0.67 0.267686
Target:  5'- aGUGGCAcuaccucgccauGAGGc--GCCGCCCuCCGCa -3'
miRNA:   3'- gCGCCGU------------CUCCcuaCGGUGGGcGGCG- -5'
11539 5' -63 NC_003085.1 + 26133 0.67 0.261224
Target:  5'- aCGCGGCcguGGAacucGGGcugcugGCCACCgaCGUCGCg -3'
miRNA:   3'- -GCGCCG---UCU----CCCua----CGGUGG--GCGGCG- -5'
11539 5' -63 NC_003085.1 + 44158 0.67 0.261224
Target:  5'- aCGCGcucGCGGAGGGAggcgacuucgGUCuccagggcguCCCGUCGCg -3'
miRNA:   3'- -GCGC---CGUCUCCCUa---------CGGu---------GGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 1269 0.67 0.260585
Target:  5'- uCGCGcacgaccuggaGCAGgaGGGGAUGCCGgaguucuCCCgcgugGCCGCg -3'
miRNA:   3'- -GCGC-----------CGUC--UCCCUACGGU-------GGG-----CGGCG- -5'
11539 5' -63 NC_003085.1 + 27459 0.67 0.254889
Target:  5'- gGCGcGCAGuuucgugcGGGAgGCCACCuCGUCGg -3'
miRNA:   3'- gCGC-CGUCu-------CCCUaCGGUGG-GCGGCg -5'
11539 5' -63 NC_003085.1 + 10540 0.67 0.254889
Target:  5'- gGuCGGCcagccGAGGGgcGCCAaagCGCCGCg -3'
miRNA:   3'- gC-GCCGu----CUCCCuaCGGUgg-GCGGCG- -5'
11539 5' -63 NC_003085.1 + 22088 0.67 0.254263
Target:  5'- cCGCGGaAGAGGcgcaGAagcagGCCGCCCagcagagcccggcGCCGCa -3'
miRNA:   3'- -GCGCCgUCUCC----CUa----CGGUGGG-------------CGGCG- -5'
11539 5' -63 NC_003085.1 + 25039 0.68 0.248681
Target:  5'- uGCGGCA---GGAUGCCGCCguacucCGUCGUc -3'
miRNA:   3'- gCGCCGUcucCCUACGGUGG------GCGGCG- -5'
11539 5' -63 NC_003085.1 + 36454 0.68 0.248681
Target:  5'- gGCGGCGccucauggcGAGGuaGUGCCACUgGCgGCu -3'
miRNA:   3'- gCGCCGU---------CUCCc-UACGGUGGgCGgCG- -5'
11539 5' -63 NC_003085.1 + 47330 0.68 0.246234
Target:  5'- gCGUGGCGgacggugacgccuGAGcacaacgccaugguGGAUGCCAUCCuCCGCg -3'
miRNA:   3'- -GCGCCGU-------------CUC--------------CCUACGGUGGGcGGCG- -5'
11539 5' -63 NC_003085.1 + 1746 0.68 0.242599
Target:  5'- aGUGGUAGAGGGugacGUCGCCgCGuuGg -3'
miRNA:   3'- gCGCCGUCUCCCua--CGGUGG-GCggCg -5'
11539 5' -63 NC_003085.1 + 7046 0.68 0.242599
Target:  5'- aGCGGCcggagccaacggAGAGGGcaucgcUGCCgaagucgaccGCCCaGCCGCc -3'
miRNA:   3'- gCGCCG------------UCUCCCu-----ACGG----------UGGG-CGGCG- -5'
11539 5' -63 NC_003085.1 + 37297 0.68 0.234877
Target:  5'- gCGCGGCGGcuGGGccgccagaauugaagGCCGCUggCGCCGUg -3'
miRNA:   3'- -GCGCCGUCu-CCCua-------------CGGUGG--GCGGCG- -5'
11539 5' -63 NC_003085.1 + 557 0.68 0.230805
Target:  5'- gCGgGGUGGccgucgaagugcAGGGcgaGCC-CCCGCCGCa -3'
miRNA:   3'- -GCgCCGUC------------UCCCua-CGGuGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 43631 0.68 0.230805
Target:  5'- aGCgGGCAc-GGGAgGCCAUCCGCCu- -3'
miRNA:   3'- gCG-CCGUcuCCCUaCGGUGGGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.