miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11540 3' -59.3 NC_003085.1 + 39575 0.69 0.326641
Target:  5'- gCGaCGAGGCgCAccggCUucCGAGCGCCUCg -3'
miRNA:   3'- gGCaGCUCCG-GUa---GAc-GCUCGCGGAG- -5'
11540 3' -59.3 NC_003085.1 + 22882 0.69 0.303872
Target:  5'- -aGUCGGGGCCGUCgccuccuggGCGGGagcgGCCg- -3'
miRNA:   3'- ggCAGCUCCGGUAGa--------CGCUCg---CGGag -5'
11540 3' -59.3 NC_003085.1 + 42923 0.69 0.303872
Target:  5'- aCCGUUGAccggaugauGGCCAcggcgUUGCuGuGCGCCUCg -3'
miRNA:   3'- -GGCAGCU---------CCGGUa----GACG-CuCGCGGAG- -5'
11540 3' -59.3 NC_003085.1 + 13462 0.7 0.289383
Target:  5'- aCGUCGcGGUCAUC-GCGGcGCGgCUCg -3'
miRNA:   3'- gGCAGCuCCGGUAGaCGCU-CGCgGAG- -5'
11540 3' -59.3 NC_003085.1 + 25018 0.7 0.287256
Target:  5'- uCCGUCGucugguAGGCCAugugccugucuccgUCUgcGCGAGCGCUg- -3'
miRNA:   3'- -GGCAGC------UCCGGU--------------AGA--CGCUCGCGGag -5'
11540 3' -59.3 NC_003085.1 + 42736 0.7 0.275441
Target:  5'- gCGUCGGGGCgA--UGCGGGCGCg-- -3'
miRNA:   3'- gGCAGCUCCGgUagACGCUCGCGgag -5'
11540 3' -59.3 NC_003085.1 + 35051 0.7 0.274758
Target:  5'- gCGUgcgcaCGAGGUCAUCggcuuccUGUGAgGCGCCUCc -3'
miRNA:   3'- gGCA-----GCUCCGGUAG-------ACGCU-CGCGGAG- -5'
11540 3' -59.3 NC_003085.1 + 30680 0.7 0.268673
Target:  5'- uUGUCGGauuGGUCaAUCUGCGAGgCGCCg- -3'
miRNA:   3'- gGCAGCU---CCGG-UAGACGCUC-GCGGag -5'
11540 3' -59.3 NC_003085.1 + 3416 0.7 0.255542
Target:  5'- gCGUCGGGGagcguCGUCUGUGcggcgaccAGCGCCUg -3'
miRNA:   3'- gGCAGCUCCg----GUAGACGC--------UCGCGGAg -5'
11540 3' -59.3 NC_003085.1 + 38084 0.72 0.219295
Target:  5'- gCCGUUGGGGCCGacgCggUGUGAGCGUCcCa -3'
miRNA:   3'- -GGCAGCUCCGGUa--G--ACGCUCGCGGaG- -5'
11540 3' -59.3 NC_003085.1 + 5389 0.72 0.21873
Target:  5'- aCCGUCGAGGCCuacgCcGCcaaguggauggagGGGCGCgUCa -3'
miRNA:   3'- -GGCAGCUCCGGua--GaCG-------------CUCGCGgAG- -5'
11540 3' -59.3 NC_003085.1 + 725 0.73 0.164224
Target:  5'- aCGUCcGGGCgGUgCU-CGAGCGCCUCg -3'
miRNA:   3'- gGCAGcUCCGgUA-GAcGCUCGCGGAG- -5'
11540 3' -59.3 NC_003085.1 + 14816 0.74 0.159886
Target:  5'- uCCG-CGAGGCCAUCgcggaGUGGuGCGCCa- -3'
miRNA:   3'- -GGCaGCUCCGGUAGa----CGCU-CGCGGag -5'
11540 3' -59.3 NC_003085.1 + 47855 0.76 0.114124
Target:  5'- uUGUCGuGGCCGaagcacaagucgcCUGCGAGCGCCUg -3'
miRNA:   3'- gGCAGCuCCGGUa------------GACGCUCGCGGAg -5'
11540 3' -59.3 NC_003085.1 + 14061 1.11 0.000262
Target:  5'- uCCGUCGAGGCCAUCUGCGAGCGCCUCg -3'
miRNA:   3'- -GGCAGCUCCGGUAGACGCUCGCGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.