miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11540 5' -51.3 NC_003085.1 + 8618 0.7 0.690526
Target:  5'- cGGGAGcggggcaagucauGGCGUC-ACCGccuUCGCCUGCg -3'
miRNA:   3'- -CCCUC-------------UUGCAGaUGGUuu-AGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 41095 0.66 0.871404
Target:  5'- aGGAGGAC----GCCAGcgaCGCCCACg -3'
miRNA:   3'- cCCUCUUGcagaUGGUUua-GCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 41498 0.66 0.871404
Target:  5'- cGGAGAGCGUaugGCUGuugcCGCCCGa -3'
miRNA:   3'- cCCUCUUGCAga-UGGUuua-GCGGGUg -5'
11540 5' -51.3 NC_003085.1 + 14867 0.66 0.879415
Target:  5'- cGGAGGAUGUCgGCCuu-UUGCaccCCGCg -3'
miRNA:   3'- cCCUCUUGCAGaUGGuuuAGCG---GGUG- -5'
11540 5' -51.3 NC_003085.1 + 23959 0.66 0.887155
Target:  5'- -cGuGGACGgcugCUGCCGu-UCGCUCACg -3'
miRNA:   3'- ccCuCUUGCa---GAUGGUuuAGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 3412 0.66 0.893148
Target:  5'- cGGGGAGCGUCgucugugcggcgACCAg--CGCCUg- -3'
miRNA:   3'- cCCUCUUGCAGa-----------UGGUuuaGCGGGug -5'
11540 5' -51.3 NC_003085.1 + 37234 0.66 0.894618
Target:  5'- aGGAGcuCGUCcccgucaccGCCAGggUGCCCGCc -3'
miRNA:   3'- cCCUCuuGCAGa--------UGGUUuaGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 15222 0.66 0.894618
Target:  5'- aGGGGGcaguaguGCGUCUcguGCUc-GUCGCaCCACg -3'
miRNA:   3'- -CCCUCu------UGCAGA---UGGuuUAGCG-GGUG- -5'
11540 5' -51.3 NC_003085.1 + 49381 0.66 0.901798
Target:  5'- uGGGAGGuCGcCUcCCGGGaCGCCgACg -3'
miRNA:   3'- -CCCUCUuGCaGAuGGUUUaGCGGgUG- -5'
11540 5' -51.3 NC_003085.1 + 48612 0.66 0.901798
Target:  5'- cGGGAGAGgaGg--ACUGGAagGCCCGCg -3'
miRNA:   3'- -CCCUCUUg-CagaUGGUUUagCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 36353 0.76 0.36347
Target:  5'- cGGGAGAGCcgugguuuGUCgcUCAAgacAUCGCCCACg -3'
miRNA:   3'- -CCCUCUUG--------CAGauGGUU---UAGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.