Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11541 | 5' | -62 | NC_003085.1 | + | 49097 | 0.66 | 0.278126 |
Target: 5'- cGAGgAGGGGCCCcucGUgcugACggGGCCCCg- -3' miRNA: 3'- -UUCgUCCCCGGGc--CAa---UG--UCGGGGau -5' |
|||||||
11541 | 5' | -62 | NC_003085.1 | + | 40606 | 0.67 | 0.238752 |
Target: 5'- cGGGCgAGGGGCCUGuGcugACGGCCgCUGc -3' miRNA: 3'- -UUCG-UCCCCGGGC-Caa-UGUCGGgGAU- -5' |
|||||||
11541 | 5' | -62 | NC_003085.1 | + | 23690 | 0.7 | 0.147843 |
Target: 5'- -cGCAGcGGGCCCGcGcaGCAGCCuCCUc -3' miRNA: 3'- uuCGUC-CCCGGGC-CaaUGUCGG-GGAu -5' |
|||||||
11541 | 5' | -62 | NC_003085.1 | + | 14233 | 1.04 | 0.000336 |
Target: 5'- gAAGCAGGGGCCCGGUUACAGCCCCUAc -3' miRNA: 3'- -UUCGUCCCCGGGCCAAUGUCGGGGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home