miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11543 5' -51.9 NC_003085.1 + 9206 0.66 0.864903
Target:  5'- cGCCAg---GUGCcgcuCCCAGAGAGg- -3'
miRNA:   3'- -CGGUacugCACGuuu-GGGUCUCUCac -5'
11543 5' -51.9 NC_003085.1 + 49361 0.66 0.856394
Target:  5'- cGCCGacgcGACGcaGC-AGCCaCAGGGGGUGg -3'
miRNA:   3'- -CGGUa---CUGCa-CGuUUGG-GUCUCUCAC- -5'
11543 5' -51.9 NC_003085.1 + 39928 0.66 0.856394
Target:  5'- gGCCGcGuCGUGCAcuaCCAGGGAGc- -3'
miRNA:   3'- -CGGUaCuGCACGUuugGGUCUCUCac -5'
11543 5' -51.9 NC_003085.1 + 29170 0.67 0.800387
Target:  5'- cGCCGcugcUGACGccggGC-AACCCGGAGAaGUc -3'
miRNA:   3'- -CGGU----ACUGCa---CGuUUGGGUCUCU-CAc -5'
11543 5' -51.9 NC_003085.1 + 38308 0.67 0.800387
Target:  5'- gGCCAccgccGACGUGCu-GCCgucGAGAGUGc -3'
miRNA:   3'- -CGGUa----CUGCACGuuUGGgu-CUCUCAC- -5'
11543 5' -51.9 NC_003085.1 + 45919 0.67 0.790326
Target:  5'- cGCCugGACGUGCGccgcgacuggcuGGCCgAGAGGGa- -3'
miRNA:   3'- -CGGuaCUGCACGU------------UUGGgUCUCUCac -5'
11543 5' -51.9 NC_003085.1 + 45910 0.68 0.737617
Target:  5'- cGCCG---UGUGC--GCCCAGAGAGg- -3'
miRNA:   3'- -CGGUacuGCACGuuUGGGUCUCUCac -5'
11543 5' -51.9 NC_003085.1 + 18366 0.68 0.715647
Target:  5'- cGCCggGGCGUGCAccGCCCGGuGGc-- -3'
miRNA:   3'- -CGGuaCUGCACGUu-UGGGUCuCUcac -5'
11543 5' -51.9 NC_003085.1 + 45607 0.68 0.714538
Target:  5'- cGCCAggcucGCGUcGCGGGCCUgcaaaccGGGGAGUGa -3'
miRNA:   3'- -CGGUac---UGCA-CGUUUGGG-------UCUCUCAC- -5'
11543 5' -51.9 NC_003085.1 + 44155 0.69 0.704523
Target:  5'- gGCCGcggcgaugGACG-GCGAACCgCuGGAGGGUGg -3'
miRNA:   3'- -CGGUa-------CUGCaCGUUUGG-G-UCUCUCAC- -5'
11543 5' -51.9 NC_003085.1 + 14364 0.69 0.693322
Target:  5'- uGCCAcucaacggggUGACGUcGCAGaugGCCCGgGAGAGg- -3'
miRNA:   3'- -CGGU----------ACUGCA-CGUU---UGGGU-CUCUCac -5'
11543 5' -51.9 NC_003085.1 + 16309 0.72 0.491658
Target:  5'- cGCCAUGACGggauGGCCCGG-GAGUu -3'
miRNA:   3'- -CGGUACUGCacguUUGGGUCuCUCAc -5'
11543 5' -51.9 NC_003085.1 + 17057 0.77 0.282308
Target:  5'- cGCCGUcGGCGUcGCGGGCCCGGAGcGUc -3'
miRNA:   3'- -CGGUA-CUGCA-CGUUUGGGUCUCuCAc -5'
11543 5' -51.9 NC_003085.1 + 11214 0.8 0.182929
Target:  5'- cGCCAUGACGUGCAAccgucaGCCCAaGGuGGUGc -3'
miRNA:   3'- -CGGUACUGCACGUU------UGGGUcUC-UCAC- -5'
11543 5' -51.9 NC_003085.1 + 13824 0.92 0.028265
Target:  5'- cGCCAUGACGUGCAGacgccGCCCAGGGaAGUGc -3'
miRNA:   3'- -CGGUACUGCACGUU-----UGGGUCUC-UCAC- -5'
11543 5' -51.9 NC_003085.1 + 14571 1.1 0.001508
Target:  5'- aGCCAUGACGUGCAAACCCAGAGAGUGc -3'
miRNA:   3'- -CGGUACUGCACGUUUGGGUCUCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.