miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 3' -54.9 NC_003085.1 + 20179 0.66 0.690463
Target:  5'- -aCGUacuccCGaGAGCCGGuGCAcgACUGGGCc -3'
miRNA:   3'- caGCA-----GCaCUCGGUCuCGU--UGACCUG- -5'
11544 3' -54.9 NC_003085.1 + 7539 0.66 0.690463
Target:  5'- cUCcagCGUGAGgcgcgacgcccaCCGGGGCAugUGGAUg -3'
miRNA:   3'- cAGca-GCACUC------------GGUCUCGUugACCUG- -5'
11544 3' -54.9 NC_003085.1 + 24044 0.67 0.623397
Target:  5'- gGUCGUCGUGAugauGUCGGAGauAUUGGGa -3'
miRNA:   3'- -CAGCAGCACU----CGGUCUCguUGACCUg -5'
11544 3' -54.9 NC_003085.1 + 3786 0.67 0.600992
Target:  5'- -cUGUgGUGAGCCAGGGgGGCcucGGAg -3'
miRNA:   3'- caGCAgCACUCGGUCUCgUUGa--CCUg -5'
11544 3' -54.9 NC_003085.1 + 20007 0.68 0.578697
Target:  5'- cGUCGUCGUgGGGCC---GCAACUcagccuggaGGACg -3'
miRNA:   3'- -CAGCAGCA-CUCGGucuCGUUGA---------CCUG- -5'
11544 3' -54.9 NC_003085.1 + 17623 0.68 0.567614
Target:  5'- -cCGUCGcGuGCCGGAGCAcCUGcGCa -3'
miRNA:   3'- caGCAGCaCuCGGUCUCGUuGACcUG- -5'
11544 3' -54.9 NC_003085.1 + 41378 0.69 0.471212
Target:  5'- uGUCGgugggCGUGAGgUcgucgaAGAGCcGCUGGGCg -3'
miRNA:   3'- -CAGCa----GCACUCgG------UCUCGuUGACCUG- -5'
11544 3' -54.9 NC_003085.1 + 25477 0.71 0.39299
Target:  5'- -cCGUUGaGGGCCGGAcGCGACaucUGGACg -3'
miRNA:   3'- caGCAGCaCUCGGUCU-CGUUG---ACCUG- -5'
11544 3' -54.9 NC_003085.1 + 46850 0.72 0.331846
Target:  5'- aUCGUCGcgGAGgCGGAGguGgUGGACu -3'
miRNA:   3'- cAGCAGCa-CUCgGUCUCguUgACCUG- -5'
11544 3' -54.9 NC_003085.1 + 40499 0.77 0.171473
Target:  5'- -gCGUCGUcGAGCCGGAGCcgcugaaggcGACUGGcACa -3'
miRNA:   3'- caGCAGCA-CUCGGUCUCG----------UUGACC-UG- -5'
11544 3' -54.9 NC_003085.1 + 15001 1.09 0.00085
Target:  5'- uGUCGUCGUGAGCCAGAGCAACUGGACu -3'
miRNA:   3'- -CAGCAGCACUCGGUCUCGUUGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.