miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 5' -65.2 NC_003085.1 + 27071 0.68 0.144942
Target:  5'- aGGCCCGugcaccacucGCgGUAGCCCAGccggcugcgcaGGCCGAg -3'
miRNA:   3'- gCCGGGUu---------CGgCGUCGGGUC-----------CCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 3299 0.68 0.139995
Target:  5'- cCGGCCCAGguagcgccggcaucGCCuuGCGGCaucgggCCAGGGCCc- -3'
miRNA:   3'- -GCCGGGUU--------------CGG--CGUCG------GGUCCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 35962 0.69 0.133758
Target:  5'- uGGCCCuGGgacuCCGCGGCCCGGuGUCAu -3'
miRNA:   3'- gCCGGGuUC----GGCGUCGGGUCcCGGUu -5'
11544 5' -65.2 NC_003085.1 + 7439 0.69 0.12986
Target:  5'- uCGGCCUcguacugGAGCgGC-GCCCAGGGgCGc -3'
miRNA:   3'- -GCCGGG-------UUCGgCGuCGGGUCCCgGUu -5'
11544 5' -65.2 NC_003085.1 + 9156 0.69 0.126749
Target:  5'- gGGCCaugGAGCCGCAcuugCUGGGGCCGAa -3'
miRNA:   3'- gCCGGg--UUCGGCGUcg--GGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 30316 0.69 0.116872
Target:  5'- gGGCUgGGcGCCGCGcaaggccuGCgCCAGGGCCAu -3'
miRNA:   3'- gCCGGgUU-CGGCGU--------CG-GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 2707 0.7 0.110691
Target:  5'- aCGGCCCAAGCgGgUAGCUgGGaGCCAGc -3'
miRNA:   3'- -GCCGGGUUCGgC-GUCGGgUCcCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 38264 0.7 0.104816
Target:  5'- -cGCCCGAguuGCCGcCAGCCCAGGGgaaCAc -3'
miRNA:   3'- gcCGGGUU---CGGC-GUCGGGUCCCg--GUu -5'
11544 5' -65.2 NC_003085.1 + 9049 0.7 0.099236
Target:  5'- gGGCCgGugaaguccgcgaGGCCGCGGCCCuuGGCCc- -3'
miRNA:   3'- gCCGGgU------------UCGGCGUCGGGucCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 32919 0.68 0.156974
Target:  5'- gCGGuCCCGcGGCgCGCGGCCUcucGGGCCc- -3'
miRNA:   3'- -GCC-GGGU-UCG-GCGUCGGGu--CCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 865 0.68 0.156974
Target:  5'- -cGUCCA--CCGUGGCCUGGGGCCAc -3'
miRNA:   3'- gcCGGGUucGGCGUCGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 38489 0.67 0.173052
Target:  5'- uGGUgccgaaaacgcgaaCCAucguGCCGguGCCCguacuGGGGCCAAa -3'
miRNA:   3'- gCCG--------------GGUu---CGGCguCGGG-----UCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 19772 0.66 0.220074
Target:  5'- aGGUgCAGaugccGCCGCGcGCcuCCAGGGCCGc -3'
miRNA:   3'- gCCGgGUU-----CGGCGU-CG--GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 17274 0.66 0.209119
Target:  5'- aGcGCCCAGGCCucgGUGGCCCGGGacucgucucccGUCAGg -3'
miRNA:   3'- gC-CGGGUUCGG---CGUCGGGUCC-----------CGGUU- -5'
11544 5' -65.2 NC_003085.1 + 36410 0.66 0.203819
Target:  5'- -uGCCCAAGCCGUuccuGUUCgAGGGCuCAAc -3'
miRNA:   3'- gcCGGGUUCGGCGu---CGGG-UCCCG-GUU- -5'
11544 5' -65.2 NC_003085.1 + 44324 0.66 0.203819
Target:  5'- cCGaGUCCGAGCgcgaCGCGGCCCGGcaggaagcGGCCu- -3'
miRNA:   3'- -GC-CGGGUUCG----GCGUCGGGUC--------CCGGuu -5'
11544 5' -65.2 NC_003085.1 + 20082 0.67 0.190583
Target:  5'- aGG-CUGAGuuGCGGCCCcacgacgacggcggcAGGGCCGu -3'
miRNA:   3'- gCCgGGUUCggCGUCGGG---------------UCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 28803 0.67 0.183773
Target:  5'- cCGGUgCGucucacggaAGCCGaAGCgCAGGGCCAGc -3'
miRNA:   3'- -GCCGgGU---------UCGGCgUCGgGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 48978 0.67 0.183773
Target:  5'- aCGGCgCgAGGCggCGCGGCUgGcGGGCCAAu -3'
miRNA:   3'- -GCCG-GgUUCG--GCGUCGGgU-CCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 44072 0.67 0.180921
Target:  5'- aGGCCCGagugcgggaguuggaGGCggacaaCGCGGCgUGGGGCCGGg -3'
miRNA:   3'- gCCGGGU---------------UCG------GCGUCGgGUCCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.