miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 5' -65.2 NC_003085.1 + 865 0.68 0.156974
Target:  5'- -cGUCCA--CCGUGGCCUGGGGCCAc -3'
miRNA:   3'- gcCGGGUucGGCGUCGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 782 0.68 0.148856
Target:  5'- gCGGCCUgcuGCUGUGGCCCcaGGCCAc -3'
miRNA:   3'- -GCCGGGuu-CGGCGUCGGGucCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 19994 0.68 0.148856
Target:  5'- aCGGCCCu-GCCGCcGUCgucguGGGGCCGc -3'
miRNA:   3'- -GCCGGGuuCGGCGuCGGg----UCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 27071 0.68 0.144942
Target:  5'- aGGCCCGugcaccacucGCgGUAGCCCAGccggcugcgcaGGCCGAg -3'
miRNA:   3'- gCCGGGUu---------CGgCGUCGGGUC-----------CCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 3299 0.68 0.139995
Target:  5'- cCGGCCCAGguagcgccggcaucGCCuuGCGGCaucgggCCAGGGCCc- -3'
miRNA:   3'- -GCCGGGUU--------------CGG--CGUCG------GGUCCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 35962 0.69 0.133758
Target:  5'- uGGCCCuGGgacuCCGCGGCCCGGuGUCAu -3'
miRNA:   3'- gCCGGGuUC----GGCGUCGGGUCcCGGUu -5'
11544 5' -65.2 NC_003085.1 + 7439 0.69 0.12986
Target:  5'- uCGGCCUcguacugGAGCgGC-GCCCAGGGgCGc -3'
miRNA:   3'- -GCCGGG-------UUCGgCGuCGGGUCCCgGUu -5'
11544 5' -65.2 NC_003085.1 + 11438 0.69 0.126749
Target:  5'- aCGGCCCGugcaaggaguggGGCUGCAcCgCCGGGGuCCAGa -3'
miRNA:   3'- -GCCGGGU------------UCGGCGUcG-GGUCCC-GGUU- -5'
11544 5' -65.2 NC_003085.1 + 9156 0.69 0.126749
Target:  5'- gGGCCaugGAGCCGCAcuugCUGGGGCCGAa -3'
miRNA:   3'- gCCGGg--UUCGGCGUcg--GGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 3209 0.69 0.123041
Target:  5'- uGGCCCGAuGCCGCaaGGCgaugccggcgcuaCCuGGGCCGg -3'
miRNA:   3'- gCCGGGUU-CGGCG--UCG-------------GGuCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 30316 0.69 0.116872
Target:  5'- gGGCUgGGcGCCGCGcaaggccuGCgCCAGGGCCAu -3'
miRNA:   3'- gCCGGgUU-CGGCGU--------CG-GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 41120 0.69 0.115925
Target:  5'- aGGCCCAGGCCG-AGCgCGGcaccccguacugcuGGCCGGa -3'
miRNA:   3'- gCCGGGUUCGGCgUCGgGUC--------------CCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 32841 0.69 0.113742
Target:  5'- gGGCCCGagaGGCCGCGcGCCgCGGGaCCGc -3'
miRNA:   3'- gCCGGGU---UCGGCGU-CGG-GUCCcGGUu -5'
11544 5' -65.2 NC_003085.1 + 2707 0.7 0.110691
Target:  5'- aCGGCCCAAGCgGgUAGCUgGGaGCCAGc -3'
miRNA:   3'- -GCCGGGUUCGgC-GUCGGgUCcCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 38264 0.7 0.104816
Target:  5'- -cGCCCGAguuGCCGcCAGCCCAGGGgaaCAc -3'
miRNA:   3'- gcCGGGUU---CGGC-GUCGGGUCCCg--GUu -5'
11544 5' -65.2 NC_003085.1 + 9049 0.7 0.099236
Target:  5'- gGGCCgGugaaguccgcgaGGCCGCGGCCCuuGGCCc- -3'
miRNA:   3'- gCCGGgU------------UCGGCGUCGGGucCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 37110 0.7 0.099236
Target:  5'- gCGGUaCAGGCCGguGUCCGGGucGCCAc -3'
miRNA:   3'- -GCCGgGUUCGGCguCGGGUCC--CGGUu -5'
11544 5' -65.2 NC_003085.1 + 40313 0.71 0.086251
Target:  5'- aGGCCCcGGCgGCgaagAGCCCgccaccaauggcgAGGGCCAGc -3'
miRNA:   3'- gCCGGGuUCGgCG----UCGGG-------------UCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 770 0.71 0.084134
Target:  5'- -uGCUCAGGCCGC-GCCCGaGGCCGGa -3'
miRNA:   3'- gcCGGGUUCGGCGuCGGGUcCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 30004 0.73 0.064436
Target:  5'- gCGGCCCugggcGGCCuuggcgacgucguccGCGGCuuCCAGGGCCAGc -3'
miRNA:   3'- -GCCGGGu----UCGG---------------CGUCG--GGUCCCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.