Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11547 | 3' | -56.6 | NC_003085.1 | + | 9835 | 0.66 | 0.611178 |
Target: 5'- gCGCUU--GUGaaGCUCGCUUUCcaagCGCg -3' miRNA: 3'- -GCGAGacUACggCGAGCGGAAGa---GCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 13247 | 0.68 | 0.462892 |
Target: 5'- uGCUgUGGUGCCGCUCuGagaaCUUGCa -3' miRNA: 3'- gCGAgACUACGGCGAG-CggaaGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 13651 | 0.67 | 0.556683 |
Target: 5'- gCGcCUCcGGUGCCcacguccacGCgCGCCUUgCUCGCc -3' miRNA: 3'- -GC-GAGaCUACGG---------CGaGCGGAA-GAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 16841 | 1.12 | 0.000386 |
Target: 5'- uCGCUCUGAUGCCGCUCGCCUUCUCGCg -3' miRNA: 3'- -GCGAGACUACGGCGAGCGGAAGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 16952 | 0.69 | 0.414478 |
Target: 5'- uCGCUCg---GCCucGUUgGCCUUCUCGUu -3' miRNA: 3'- -GCGAGacuaCGG--CGAgCGGAAGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 17757 | 0.66 | 0.622167 |
Target: 5'- uGCUcCUGccugGCCGCgUCGUCggUCUCaGCg -3' miRNA: 3'- gCGA-GACua--CGGCG-AGCGGa-AGAG-CG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 22324 | 0.67 | 0.556683 |
Target: 5'- gGC-CUGcUGCCGCUC-CUUcgUCUCGUu -3' miRNA: 3'- gCGaGACuACGGCGAGcGGA--AGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 23201 | 0.67 | 0.567493 |
Target: 5'- aGCUCUGcgccgucuUGCgGUgcugCGCCgcCUCGCu -3' miRNA: 3'- gCGAGACu-------ACGgCGa---GCGGaaGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 23734 | 0.67 | 0.556683 |
Target: 5'- aCGC-CUGGgcGgCGUUCGCCUgcgcggccugCUCGCg -3' miRNA: 3'- -GCGaGACUa-CgGCGAGCGGAa---------GAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 24797 | 0.68 | 0.514112 |
Target: 5'- ----aUGGUGCCGCUCaGCCcgUCgcggCGCg -3' miRNA: 3'- gcgagACUACGGCGAG-CGGa-AGa---GCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 25096 | 0.68 | 0.514112 |
Target: 5'- gCGCgggugaUGGUGCCcaGCggCGCCUUCUgcacCGCg -3' miRNA: 3'- -GCGag----ACUACGG--CGa-GCGGAAGA----GCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 26122 | 0.66 | 0.633165 |
Target: 5'- uGCUC-GAUG-CGCUCGCCcugCUCc- -3' miRNA: 3'- gCGAGaCUACgGCGAGCGGaa-GAGcg -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 31010 | 0.69 | 0.443161 |
Target: 5'- gGgUCUGcgGCUGCcugUCGCacCUUCUCGUa -3' miRNA: 3'- gCgAGACuaCGGCG---AGCG--GAAGAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 31181 | 0.68 | 0.483074 |
Target: 5'- uGCUCggGGUugaGCCGCUCGCCgcuuaUgGCc -3' miRNA: 3'- gCGAGa-CUA---CGGCGAGCGGaag--AgCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 32776 | 0.68 | 0.514112 |
Target: 5'- aCGCaCUGuUGCCGCaaUGCCUUUcCGCa -3' miRNA: 3'- -GCGaGACuACGGCGa-GCGGAAGaGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 32896 | 0.66 | 0.589264 |
Target: 5'- aGCaUC-GggGCCGUcCGCCUUCgacgUCGCg -3' miRNA: 3'- gCG-AGaCuaCGGCGaGCGGAAG----AGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 36151 | 0.68 | 0.503671 |
Target: 5'- gGCUCgcUGAUGauggucgccgaCCGCUCGCCgcgaUUCGUa -3' miRNA: 3'- gCGAG--ACUAC-----------GGCGAGCGGaa--GAGCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 39101 | 0.67 | 0.567493 |
Target: 5'- gCGCUCgcccacgcAUGCCG-UCGCCUcCUcCGCg -3' miRNA: 3'- -GCGAGac------UACGGCgAGCGGAaGA-GCG- -5' |
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11547 | 3' | -56.6 | NC_003085.1 | + | 39499 | 0.67 | 0.567493 |
Target: 5'- gCGCUCgaGAaGCCGgUgCGCCUcgUCGCu -3' miRNA: 3'- -GCGAGa-CUaCGGCgA-GCGGAagAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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