miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11547 5' -54.9 NC_003085.1 + 43071 0.67 0.650539
Target:  5'- gCGugGAGAcacGGCCGAgGAagaaacgaccGGCCGccAGCa -3'
miRNA:   3'- -GUugCUCUu--CCGGUUgCU----------CCGGC--UCG- -5'
11547 5' -54.9 NC_003085.1 + 39022 0.67 0.650539
Target:  5'- ---gGAGGAGGCgAcggcauGCGuGGgCGAGCg -3'
miRNA:   3'- guugCUCUUCCGgU------UGCuCCgGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 30227 0.67 0.64721
Target:  5'- uGGCGGGGgugacguccugcguGGGCUGcUGGGGCCG-GCg -3'
miRNA:   3'- gUUGCUCU--------------UCCGGUuGCUCCGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 4917 0.67 0.643879
Target:  5'- uGACGuGGAGGCCaucgucgaaagagucGuccgGCGGGuGCUGGGCa -3'
miRNA:   3'- gUUGCuCUUCCGG---------------U----UGCUC-CGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 16355 0.67 0.639437
Target:  5'- cCGACGAcAAGGgCAcCGAGGCauuccaggcgCGGGCa -3'
miRNA:   3'- -GUUGCUcUUCCgGUuGCUCCG----------GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 37933 0.67 0.639437
Target:  5'- cCGACGucuGGccGGCCAGCGcAGGCagcgcuaccaGGGCa -3'
miRNA:   3'- -GUUGC---UCuuCCGGUUGC-UCCGg---------CUCG- -5'
11547 5' -54.9 NC_003085.1 + 16700 0.67 0.628329
Target:  5'- gGGCGGGGgcuugGGGCUugcGACGGGuuucaaGCCGAGUg -3'
miRNA:   3'- gUUGCUCU-----UCCGG---UUGCUC------CGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 11597 0.67 0.628329
Target:  5'- gAACGGGGcAGGgCGGCGcgaagGGGCUGuGCa -3'
miRNA:   3'- gUUGCUCU-UCCgGUUGC-----UCCGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 48486 0.67 0.617225
Target:  5'- ---gGAGGAaGCCAGCGccGCCGAGg -3'
miRNA:   3'- guugCUCUUcCGGUUGCucCGGCUCg -5'
11547 5' -54.9 NC_003085.1 + 7528 0.67 0.617225
Target:  5'- cCGACGAGGacgcgcGGGCCGAggggugugacguCGAccuugccgcGGCCGAGg -3'
miRNA:   3'- -GUUGCUCU------UCCGGUU------------GCU---------CCGGCUCg -5'
11547 5' -54.9 NC_003085.1 + 10534 0.67 0.617225
Target:  5'- cCAGcCGAGggGcGCCAaaGCGccGCgGAGCc -3'
miRNA:   3'- -GUU-GCUCuuC-CGGU--UGCucCGgCUCG- -5'
11547 5' -54.9 NC_003085.1 + 4159 0.67 0.617225
Target:  5'- gCGGCGAGugcGGGCgCuccaccAgGAGGCgGAGCg -3'
miRNA:   3'- -GUUGCUCu--UCCG-Gu-----UgCUCCGgCUCG- -5'
11547 5' -54.9 NC_003085.1 + 7163 0.67 0.617225
Target:  5'- cCGGCGAGGAuGGCgCucaccAUGGGGCCacugaaGAGCa -3'
miRNA:   3'- -GUUGCUCUU-CCG-Gu----UGCUCCGG------CUCG- -5'
11547 5' -54.9 NC_003085.1 + 4220 0.67 0.616115
Target:  5'- gCGGCGGGuuacgcuGAGcGUCAGCcGGGCCGcAGCg -3'
miRNA:   3'- -GUUGCUC-------UUC-CGGUUGcUCCGGC-UCG- -5'
11547 5' -54.9 NC_003085.1 + 8514 0.68 0.606133
Target:  5'- gCGACaGGGAcGGCUgcuGCu-GGCCGAGCa -3'
miRNA:   3'- -GUUG-CUCUuCCGGu--UGcuCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 13752 0.68 0.606133
Target:  5'- cCAACG-GGAGGCCGuuggACGAacacuGGUCG-GCg -3'
miRNA:   3'- -GUUGCuCUUCCGGU----UGCU-----CCGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 14791 0.68 0.606133
Target:  5'- -cGCGGGGugcaaaAGGCCGacauccuccGCGAGGCCaucgcgGAGUg -3'
miRNA:   3'- guUGCUCU------UCCGGU---------UGCUCCGG------CUCG- -5'
11547 5' -54.9 NC_003085.1 + 555 0.68 0.606133
Target:  5'- gGGCGGGguGGCCGuCGAagugcaGGgCGAGCc -3'
miRNA:   3'- gUUGCUCuuCCGGUuGCU------CCgGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 9460 0.68 0.605025
Target:  5'- gGACGAGcucGAGGCCGggcaauucguccaGCGAuaugaGGCUGAGg -3'
miRNA:   3'- gUUGCUC---UUCCGGU-------------UGCU-----CCGGCUCg -5'
11547 5' -54.9 NC_003085.1 + 34232 0.68 0.595065
Target:  5'- aCGGCGuaauGGCCAcCGGGGCaGGGCc -3'
miRNA:   3'- -GUUGCucuuCCGGUuGCUCCGgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.