miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 3' -62 NC_003085.1 + 31969 0.66 0.305659
Target:  5'- cGGGCuggcgacugccCCCGuUACGCCUGGGGcuGGCGc -3'
miRNA:   3'- uUCCG-----------GGGC-GUGUGGACCCUu-CCGUa -5'
11548 3' -62 NC_003085.1 + 7029 0.66 0.305659
Target:  5'- cAAGGCCCuCGCGCg---GGGuGGGCGa -3'
miRNA:   3'- -UUCCGGG-GCGUGuggaCCCuUCCGUa -5'
11548 3' -62 NC_003085.1 + 29038 0.66 0.290913
Target:  5'- uGGGCCCCugcgucCACugUUGGGAGgcccacGGCGUg -3'
miRNA:   3'- uUCCGGGGc-----GUGugGACCCUU------CCGUA- -5'
11548 3' -62 NC_003085.1 + 44616 0.66 0.269847
Target:  5'- aAAGGCCCCGcCGCACUauUGcGGcGAGGUu- -3'
miRNA:   3'- -UUCCGGGGC-GUGUGG--AC-CC-UUCCGua -5'
11548 3' -62 NC_003085.1 + 5801 0.67 0.263104
Target:  5'- -uGGCCUucgucggagcggUGCGCAUC-GGGGAGGCGUc -3'
miRNA:   3'- uuCCGGG------------GCGUGUGGaCCCUUCCGUA- -5'
11548 3' -62 NC_003085.1 + 17891 0.67 0.262437
Target:  5'- aGGGGCCugCCGCacaggcgGCACCgGGGcGGGCGg -3'
miRNA:   3'- -UUCCGG--GGCG-------UGUGGaCCCuUCCGUa -5'
11548 3' -62 NC_003085.1 + 10331 0.67 0.256498
Target:  5'- -cGGcCCCCGCcacguCGCCUcccGGGAGGCAc -3'
miRNA:   3'- uuCC-GGGGCGu----GUGGAc--CCUUCCGUa -5'
11548 3' -62 NC_003085.1 + 23750 0.67 0.243068
Target:  5'- -cGGgCCCGCugcguggACGCCUGGGc-GGCGUu -3'
miRNA:   3'- uuCCgGGGCG-------UGUGGACCCuuCCGUA- -5'
11548 3' -62 NC_003085.1 + 31683 0.68 0.219682
Target:  5'- cAGGCCCCGCGgccggugccuCCUGGGGcuGCAc -3'
miRNA:   3'- uUCCGGGGCGUgu--------GGACCCUucCGUa -5'
11548 3' -62 NC_003085.1 + 41024 0.7 0.139119
Target:  5'- cGGGGCCaCagGgACGCCUGGGAgAGGCAc -3'
miRNA:   3'- -UUCCGG-Gg-CgUGUGGACCCU-UCCGUa -5'
11548 3' -62 NC_003085.1 + 16942 0.99 0.000785
Target:  5'- cAAGGCCCCGCACACCUGGGAAGGCu- -3'
miRNA:   3'- -UUCCGGGGCGUGUGGACCCUUCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.