miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 38412 0.67 0.35725
Target:  5'- aGGAaGuuGCGCgugCCaGGCCCGagcuuuaggcaCGACGCCa -3'
miRNA:   3'- -UCUaC--UGCGa--GGcCCGGGC-----------GCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 30326 0.67 0.35725
Target:  5'- gGGgcGGCGggggCUGGGCgCCGCGcaaggccuGCGCCa -3'
miRNA:   3'- -UCuaCUGCga--GGCCCG-GGCGC--------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 39670 0.67 0.354811
Target:  5'- cGGUG-CGCUCCGcGacgcgcuccagcuuGCCaGUGGCGCCg -3'
miRNA:   3'- uCUACuGCGAGGC-C--------------CGGgCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 25248 0.67 0.349167
Target:  5'- uGGUG-CGCUCCGcGGCggGCGuCGUCg -3'
miRNA:   3'- uCUACuGCGAGGC-CCGggCGCuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 34609 0.67 0.349167
Target:  5'- uGGUGGCGCUCgCGGccGCUguguUGCuGACGCUg -3'
miRNA:   3'- uCUACUGCGAG-GCC--CGG----GCG-CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 41070 0.67 0.348365
Target:  5'- cGAUGACGaCgccgCUGGGCCagcccuugccgcuUGCGAgCGCUg -3'
miRNA:   3'- uCUACUGC-Ga---GGCCCGG-------------GCGCU-GCGG- -5'
11548 5' -61.6 NC_003085.1 + 15955 0.67 0.346767
Target:  5'- uGGUGGCGCUCCcuuGGCCgcugggagguggggCGUGAgCGUCa -3'
miRNA:   3'- uCUACUGCGAGGc--CCGG--------------GCGCU-GCGG- -5'
11548 5' -61.6 NC_003085.1 + 36683 0.67 0.342004
Target:  5'- aGGcgGGCGCcggauUCCGGGCCUGacugcacauaguccACGCCc -3'
miRNA:   3'- -UCuaCUGCG-----AGGCCCGGGCgc------------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 21890 0.67 0.341214
Target:  5'- uGAUGA-GCUCgGcGGCCUugGGCGCCa -3'
miRNA:   3'- uCUACUgCGAGgC-CCGGGcgCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 11865 0.67 0.333394
Target:  5'- cGAUGGgGCagCCGacacGCCCggagcGCGGCGCCg -3'
miRNA:   3'- uCUACUgCGa-GGCc---CGGG-----CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 46747 0.67 0.325705
Target:  5'- cGgcGGCGCUCCaGGCggCgGCGaaGCGCCu -3'
miRNA:   3'- uCuaCUGCGAGGcCCG--GgCGC--UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 23426 0.67 0.325705
Target:  5'- gGGGcuGCGcCUCgGcGGCCgGCGGCGCUu -3'
miRNA:   3'- -UCUacUGC-GAGgC-CCGGgCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 7532 0.67 0.325705
Target:  5'- cGAgGACGCg-CGGGCCgaggggUGUGACGUCg -3'
miRNA:   3'- uCUaCUGCGagGCCCGG------GCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 6734 0.67 0.324944
Target:  5'- cGAUGACcgauGgUCCGacugcccGGCCUGCcGCGCCg -3'
miRNA:   3'- uCUACUG----CgAGGC-------CCGGGCGcUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 39141 0.67 0.324944
Target:  5'- uGGAUGACGC-CCuggcaaaGGGCUa-CGGCGUCg -3'
miRNA:   3'- -UCUACUGCGaGG-------CCCGGgcGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 27658 0.67 0.321156
Target:  5'- aAGGUGGC-CgaacuggCCGGGUCCgugcccugccagaugGCGACGUCa -3'
miRNA:   3'- -UCUACUGcGa------GGCCCGGG---------------CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 40355 0.67 0.31815
Target:  5'- cGGUGG-GCaagCCGcugcuGCCCGCGGCGCUg -3'
miRNA:   3'- uCUACUgCGa--GGCc----CGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 491 0.68 0.310726
Target:  5'- cGGgcGAgGCUgaGGGCCUGCGuuuggaGCCg -3'
miRNA:   3'- -UCuaCUgCGAggCCCGGGCGCug----CGG- -5'
11548 5' -61.6 NC_003085.1 + 12225 0.68 0.310726
Target:  5'- gGGAUGGgGCUCCaaggcuGGGCCCauGCGgaacgaguucauGCGCg -3'
miRNA:   3'- -UCUACUgCGAGG------CCCGGG--CGC------------UGCGg -5'
11548 5' -61.6 NC_003085.1 + 19052 0.68 0.304159
Target:  5'- gAGAUuccgcGGCGCgcggcggagcaggcgCCGGGCCCGgaCGgaguGCGCCg -3'
miRNA:   3'- -UCUA-----CUGCGa--------------GGCCCGGGC--GC----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.