miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11549 3' -57.9 NC_003085.1 + 48369 0.66 0.539088
Target:  5'- cGCuuGCGGUAGGGcCUACGacgcuGCcGGGGCg -3'
miRNA:   3'- -UGu-UGCCGUCCCuGGUGC-----CGuUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 12845 0.66 0.528466
Target:  5'- aACGGCGGCAGGGGCauCACcccaGGCcaccucGACa -3'
miRNA:   3'- -UGUUGCCGUCCCUG--GUG----CCGuuc---CUG- -5'
11549 3' -57.9 NC_003085.1 + 12979 0.66 0.517923
Target:  5'- gGCGGCcguGGCGGGGucGCCAUugcacgggaGGCuucGAGGGCg -3'
miRNA:   3'- -UGUUG---CCGUCCC--UGGUG---------CCG---UUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 40971 0.66 0.517923
Target:  5'- --cACGGCAGGucuuGAggUCGCGGCGcAGGAUg -3'
miRNA:   3'- uguUGCCGUCC----CU--GGUGCCGU-UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 32817 0.66 0.504344
Target:  5'- aGCAGCGGCugucgcgacugauuGGGGcccgagagGCCGCGcGCcgcGGGACc -3'
miRNA:   3'- -UGUUGCCG--------------UCCC--------UGGUGC-CGu--UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 12292 0.66 0.498129
Target:  5'- cGCGACGGCgcggugguccgcugGGuugcGGcgcacaccgacccgaACCugGGCAAGGGCa -3'
miRNA:   3'- -UGUUGCCG--------------UC----CC---------------UGGugCCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 16696 0.66 0.497097
Target:  5'- cGCAG-GGCGGGGGCUugGgGCuuGcGACg -3'
miRNA:   3'- -UGUUgCCGUCCCUGGugC-CGuuC-CUG- -5'
11549 3' -57.9 NC_003085.1 + 42066 0.66 0.497097
Target:  5'- cGCcGgGGCAGGaa-CACGGCGAGG-Cg -3'
miRNA:   3'- -UGuUgCCGUCCcugGUGCCGUUCCuG- -5'
11549 3' -57.9 NC_003085.1 + 26081 0.67 0.476656
Target:  5'- cGCAA-GGCAcGGuGACgCAUGGCcuGGGACa -3'
miRNA:   3'- -UGUUgCCGU-CC-CUG-GUGCCGu-UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 28244 0.67 0.476656
Target:  5'- gGCAGCGGUAcuuGGGAcggcuccaCCugGGaCGuGGACg -3'
miRNA:   3'- -UGUUGCCGU---CCCU--------GGugCC-GUuCCUG- -5'
11549 3' -57.9 NC_003085.1 + 11603 0.67 0.476656
Target:  5'- gGCAggGCGGCgcgaAGGGGCUgu-GCAGGGGCu -3'
miRNA:   3'- -UGU--UGCCG----UCCCUGGugcCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 10398 0.67 0.470605
Target:  5'- gGCGACguGGCGGGGGCCGCaucGCAuucguuccacagccGGACc -3'
miRNA:   3'- -UGUUG--CCGUCCCUGGUGc--CGUu-------------CCUG- -5'
11549 3' -57.9 NC_003085.1 + 38250 0.67 0.466593
Target:  5'- cCAGCc-CAGGGgaacaccugcGCCGCGGCGGGGAg -3'
miRNA:   3'- uGUUGccGUCCC----------UGGUGCCGUUCCUg -5'
11549 3' -57.9 NC_003085.1 + 15347 0.67 0.455651
Target:  5'- cGCGggcGCGGCGGGugagcucGGCCGCGGCcuccGGGuCg -3'
miRNA:   3'- -UGU---UGCCGUCC-------CUGGUGCCGu---UCCuG- -5'
11549 3' -57.9 NC_003085.1 + 17918 0.67 0.450724
Target:  5'- gGCGccuGCGGgcaccagcacugcccCAGGGGCCugccgcacagGCGGCAccGGGGCg -3'
miRNA:   3'- -UGU---UGCC---------------GUCCCUGG----------UGCCGU--UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 17972 0.67 0.437085
Target:  5'- aGCGcCGGCAGcgcGGGCCGCagGGCAcGGAg -3'
miRNA:   3'- -UGUuGCCGUC---CCUGGUG--CCGUuCCUg -5'
11549 3' -57.9 NC_003085.1 + 44046 0.68 0.41802
Target:  5'- gACAacGCGGCGuGGGGCCG-GGCcguGAGGGa -3'
miRNA:   3'- -UGU--UGCCGU-CCCUGGUgCCG---UUCCUg -5'
11549 3' -57.9 NC_003085.1 + 35888 0.68 0.41802
Target:  5'- aGCuucuGCGGCuccuccGGGAgcgcaaccCCAUGGaCAAGGACa -3'
miRNA:   3'- -UGu---UGCCGu-----CCCU--------GGUGCC-GUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 8648 0.69 0.373526
Target:  5'- gACGACGGCGGcauGCCACGGUuguugcggcgggagcGGGGCa -3'
miRNA:   3'- -UGUUGCCGUCcc-UGGUGCCGu--------------UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 41165 0.69 0.372652
Target:  5'- cCAACGGCu---ACCugGGCAAGGGg -3'
miRNA:   3'- uGUUGCCGucccUGGugCCGUUCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.