miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11549 3' -57.9 NC_003085.1 + 17098 1.1 0.000394
Target:  5'- gACAACGGCAGGGACCACGGCAAGGACg -3'
miRNA:   3'- -UGUUGCCGUCCCUGGUGCCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 41165 0.69 0.372652
Target:  5'- cCAACGGCu---ACCugGGCAAGGGg -3'
miRNA:   3'- uGUUGCCGucccUGGugCCGUUCCUg -5'
11549 3' -57.9 NC_003085.1 + 17972 0.67 0.437085
Target:  5'- aGCGcCGGCAGcgcGGGCCGCagGGCAcGGAg -3'
miRNA:   3'- -UGUuGCCGUC---CCUGGUG--CCGUuCCUg -5'
11549 3' -57.9 NC_003085.1 + 11603 0.67 0.476656
Target:  5'- gGCAggGCGGCgcgaAGGGGCUgu-GCAGGGGCu -3'
miRNA:   3'- -UGU--UGCCG----UCCCUGGugcCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 28244 0.67 0.476656
Target:  5'- gGCAGCGGUAcuuGGGAcggcuccaCCugGGaCGuGGACg -3'
miRNA:   3'- -UGUUGCCGU---CCCU--------GGugCC-GUuCCUG- -5'
11549 3' -57.9 NC_003085.1 + 26081 0.67 0.476656
Target:  5'- cGCAA-GGCAcGGuGACgCAUGGCcuGGGACa -3'
miRNA:   3'- -UGUUgCCGU-CC-CUG-GUGCCGu-UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 16696 0.66 0.497097
Target:  5'- cGCAG-GGCGGGGGCUugGgGCuuGcGACg -3'
miRNA:   3'- -UGUUgCCGUCCCUGGugC-CGuuC-CUG- -5'
11549 3' -57.9 NC_003085.1 + 12292 0.66 0.498129
Target:  5'- cGCGACGGCgcggugguccgcugGGuugcGGcgcacaccgacccgaACCugGGCAAGGGCa -3'
miRNA:   3'- -UGUUGCCG--------------UC----CC---------------UGGugCCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 32817 0.66 0.504344
Target:  5'- aGCAGCGGCugucgcgacugauuGGGGcccgagagGCCGCGcGCcgcGGGACc -3'
miRNA:   3'- -UGUUGCCG--------------UCCC--------UGGUGC-CGu--UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 5047 0.69 0.372652
Target:  5'- gGCAGgcGCAGGGACUccugACGGCu-GGGCa -3'
miRNA:   3'- -UGUUgcCGUCCCUGG----UGCCGuuCCUG- -5'
11549 3' -57.9 NC_003085.1 + 32321 0.69 0.344598
Target:  5'- gACAcaGGUgccaucgucccaugGGGGACCACcGCAGGGGCu -3'
miRNA:   3'- -UGUugCCG--------------UCCCUGGUGcCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 31664 0.7 0.32201
Target:  5'- uCGGCGGCAGauuggucGGACUcgGGCGGGGGCc -3'
miRNA:   3'- uGUUGCCGUC-------CCUGGugCCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 37145 0.77 0.111375
Target:  5'- gGCGACGGCGGGcACCcugGCGGUgacGGGGACg -3'
miRNA:   3'- -UGUUGCCGUCCcUGG---UGCCG---UUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 10153 0.76 0.11455
Target:  5'- --cGCGGCGGGGAgUACcGCGAGGACc -3'
miRNA:   3'- uguUGCCGUCCCUgGUGcCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 373 0.76 0.121153
Target:  5'- gACAACGGgAGGGGCCaguaccucuACGGCAAGcGCc -3'
miRNA:   3'- -UGUUGCCgUCCCUGG---------UGCCGUUCcUG- -5'
11549 3' -57.9 NC_003085.1 + 35706 0.75 0.135433
Target:  5'- -uGAgGGCGucaacuuuGGcGGCCACGGCGAGGGCa -3'
miRNA:   3'- ugUUgCCGU--------CC-CUGGUGCCGUUCCUG- -5'
11549 3' -57.9 NC_003085.1 + 26652 0.74 0.15933
Target:  5'- gGCAACGcGCcaAGGGAuucgacuCCACGGCGugccAGGACg -3'
miRNA:   3'- -UGUUGC-CG--UCCCU-------GGUGCCGU----UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 28975 0.74 0.164187
Target:  5'- -gGAC-GCAGGGGCCcaACGGCAguuGGGGCa -3'
miRNA:   3'- ugUUGcCGUCCCUGG--UGCCGU---UCCUG- -5'
11549 3' -57.9 NC_003085.1 + 40555 0.72 0.232335
Target:  5'- aACGACGGCAcGGugacGGCCGCGGU--GGACc -3'
miRNA:   3'- -UGUUGCCGU-CC----CUGGUGCCGuuCCUG- -5'
11549 3' -57.9 NC_003085.1 + 46916 0.71 0.278092
Target:  5'- cACcGCGGCAGGcGGCacagguucggCGCGcGCAGGGGCc -3'
miRNA:   3'- -UGuUGCCGUCC-CUG----------GUGC-CGUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.