miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11549 5' -57.3 NC_003085.1 + 29134 0.66 0.562861
Target:  5'- aAGGCuggcucagGCUGG-UGGCcaaCUGCUGCUGg -3'
miRNA:   3'- cUCCG--------UGACCuGCCGca-GACGAUGAC- -5'
11549 5' -57.3 NC_003085.1 + 41527 0.66 0.530519
Target:  5'- cGGGCGCUaccGGugGagugaCGUCUGCUGCc- -3'
miRNA:   3'- cUCCGUGA---CCugCc----GCAGACGAUGac -5'
11549 5' -57.3 NC_003085.1 + 31417 0.68 0.409688
Target:  5'- -cGGCGCgggcgGGACGGCcggccugggacGUCUGCUGa-- -3'
miRNA:   3'- cuCCGUGa----CCUGCCG-----------CAGACGAUgac -5'
11549 5' -57.3 NC_003085.1 + 24699 0.68 0.409688
Target:  5'- -uGGUGCUGGACGGCGgcaUCgGCgGCUu -3'
miRNA:   3'- cuCCGUGACCUGCCGC---AGaCGaUGAc -5'
11549 5' -57.3 NC_003085.1 + 39033 0.68 0.400399
Target:  5'- -cGGCAUgcgUGGGCGagcgcugcGCGUacCUGCUGCUGg -3'
miRNA:   3'- cuCCGUG---ACCUGC--------CGCA--GACGAUGAC- -5'
11549 5' -57.3 NC_003085.1 + 22177 0.68 0.400399
Target:  5'- cGGGCucuGCUGGGCGGC--CUGCUuCUGc -3'
miRNA:   3'- cUCCG---UGACCUGCCGcaGACGAuGAC- -5'
11549 5' -57.3 NC_003085.1 + 48782 0.69 0.364618
Target:  5'- aGAGGUGCUGGugGGCGagUCcGCcACg- -3'
miRNA:   3'- -CUCCGUGACCugCCGC--AGaCGaUGac -5'
11549 5' -57.3 NC_003085.1 + 41892 0.69 0.356025
Target:  5'- uGGGGCGCuUGGGCGGCGccgacaUGCgcgagccugUGCUGg -3'
miRNA:   3'- -CUCCGUG-ACCUGCCGCag----ACG---------AUGAC- -5'
11549 5' -57.3 NC_003085.1 + 32140 0.7 0.32869
Target:  5'- gGGGGCgGCUGGuggcgcgguggguuACGGCGUCggccagGCUGCg- -3'
miRNA:   3'- -CUCCG-UGACC--------------UGCCGCAGa-----CGAUGac -5'
11549 5' -57.3 NC_003085.1 + 40745 0.71 0.264199
Target:  5'- gGAGGCACUGGA-GGUGUCcuugggccucgUGUgGCUGa -3'
miRNA:   3'- -CUCCGUGACCUgCCGCAG-----------ACGaUGAC- -5'
11549 5' -57.3 NC_003085.1 + 10715 0.76 0.13098
Target:  5'- cGAGGCACUGGcugacggcaaGCGGaCG-CUGUUGCUGu -3'
miRNA:   3'- -CUCCGUGACC----------UGCC-GCaGACGAUGAC- -5'
11549 5' -57.3 NC_003085.1 + 13907 0.76 0.123831
Target:  5'- -cGGCACuucccUGGGCGGCGUCUGC-ACg- -3'
miRNA:   3'- cuCCGUG-----ACCUGCCGCAGACGaUGac -5'
11549 5' -57.3 NC_003085.1 + 17133 1.08 0.000523
Target:  5'- gGAGGCACUGGACGGCGUCUGCUACUGg -3'
miRNA:   3'- -CUCCGUGACCUGCCGCAGACGAUGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.