miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11550 3' -52.6 NC_003085.1 + 38070 0.66 0.85334
Target:  5'- --gGUGCGUcgcgGAGACGgcagcgcaggUGUCCGgcGCc -3'
miRNA:   3'- cuaCACGCA----CUCUGCa---------GCAGGCuaCG- -5'
11550 3' -52.6 NC_003085.1 + 5505 0.66 0.849889
Target:  5'- cGGUGUGC-UGAcGCGUCGgcacgugcucgcaCUGGUGCg -3'
miRNA:   3'- -CUACACGcACUcUGCAGCa------------GGCUACG- -5'
11550 3' -52.6 NC_003085.1 + 15383 0.68 0.73595
Target:  5'- gGAUGcaggaGCGUGAGgacgaGCGUCagcagCCGAUGCc -3'
miRNA:   3'- -CUACa----CGCACUC-----UGCAGca---GGCUACG- -5'
11550 3' -52.6 NC_003085.1 + 15335 0.69 0.703367
Target:  5'- ----gGCGUGAGACGggCaUCCGAcGCa -3'
miRNA:   3'- cuacaCGCACUCUGCa-GcAGGCUaCG- -5'
11550 3' -52.6 NC_003085.1 + 41375 0.69 0.681264
Target:  5'- cGGUGgGCGUGAGGuCGUCGaagagCCGcugggcgcuGUGCa -3'
miRNA:   3'- -CUACaCGCACUCU-GCAGCa----GGC---------UACG- -5'
11550 3' -52.6 NC_003085.1 + 42729 0.69 0.647774
Target:  5'- ----gGCGUG-GGCGUCGgggCGAUGCg -3'
miRNA:   3'- cuacaCGCACuCUGCAGCag-GCUACG- -5'
11550 3' -52.6 NC_003085.1 + 30010 0.7 0.591795
Target:  5'- -cUGgGCGgccuUGGcGACGUCGUCCGcgGCu -3'
miRNA:   3'- cuACaCGC----ACU-CUGCAGCAGGCuaCG- -5'
11550 3' -52.6 NC_003085.1 + 39486 0.71 0.558552
Target:  5'- cGUGcGCGUcGAGGCGcUCGagaagCCGGUGCg -3'
miRNA:   3'- cUACaCGCA-CUCUGC-AGCa----GGCUACG- -5'
11550 3' -52.6 NC_003085.1 + 3095 0.73 0.432899
Target:  5'- ----cGCGUGcaccgucuGGGCGUCGUCCG-UGCg -3'
miRNA:   3'- cuacaCGCAC--------UCUGCAGCAGGCuACG- -5'
11550 3' -52.6 NC_003085.1 + 17308 1.13 0.001032
Target:  5'- gGAUGUGCGUGAGACGUCGUCCGAUGCg -3'
miRNA:   3'- -CUACACGCACUCUGCAGCAGGCUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.