Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11550 | 3' | -52.6 | NC_003085.1 | + | 42729 | 0.69 | 0.647774 |
Target: 5'- ----gGCGUG-GGCGUCGgggCGAUGCg -3' miRNA: 3'- cuacaCGCACuCUGCAGCag-GCUACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 41375 | 0.69 | 0.681264 |
Target: 5'- cGGUGgGCGUGAGGuCGUCGaagagCCGcugggcgcuGUGCa -3' miRNA: 3'- -CUACaCGCACUCU-GCAGCa----GGC---------UACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 39486 | 0.71 | 0.558552 |
Target: 5'- cGUGcGCGUcGAGGCGcUCGagaagCCGGUGCg -3' miRNA: 3'- cUACaCGCA-CUCUGC-AGCa----GGCUACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 38070 | 0.66 | 0.85334 |
Target: 5'- --gGUGCGUcgcgGAGACGgcagcgcaggUGUCCGgcGCc -3' miRNA: 3'- cuaCACGCA----CUCUGCa---------GCAGGCuaCG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 30010 | 0.7 | 0.591795 |
Target: 5'- -cUGgGCGgccuUGGcGACGUCGUCCGcgGCu -3' miRNA: 3'- cuACaCGC----ACU-CUGCAGCAGGCuaCG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 17308 | 1.13 | 0.001032 |
Target: 5'- gGAUGUGCGUGAGACGUCGUCCGAUGCg -3' miRNA: 3'- -CUACACGCACUCUGCAGCAGGCUACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 15383 | 0.68 | 0.73595 |
Target: 5'- gGAUGcaggaGCGUGAGgacgaGCGUCagcagCCGAUGCc -3' miRNA: 3'- -CUACa----CGCACUC-----UGCAGca---GGCUACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 15335 | 0.69 | 0.703367 |
Target: 5'- ----gGCGUGAGACGggCaUCCGAcGCa -3' miRNA: 3'- cuacaCGCACUCUGCa-GcAGGCUaCG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 5505 | 0.66 | 0.849889 |
Target: 5'- cGGUGUGC-UGAcGCGUCGgcacgugcucgcaCUGGUGCg -3' miRNA: 3'- -CUACACGcACUcUGCAGCa------------GGCUACG- -5' |
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11550 | 3' | -52.6 | NC_003085.1 | + | 3095 | 0.73 | 0.432899 |
Target: 5'- ----cGCGUGcaccgucuGGGCGUCGUCCG-UGCg -3' miRNA: 3'- cuacaCGCAC--------UCUGCAGCAGGCuACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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