miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11550 5' -58.6 NC_003085.1 + 48472 0.66 0.471068
Target:  5'- cAGCCUUGGCGuGCU-CCUCGGcaaGCGc -3'
miRNA:   3'- cUUGGGACCGCuCGGuGGAGUCa--CGU- -5'
11550 5' -58.6 NC_003085.1 + 10774 0.66 0.461044
Target:  5'- aGACgCUGGgGGcauGCCACCUCuuccgcgcagcGGUGCGa -3'
miRNA:   3'- cUUGgGACCgCU---CGGUGGAG-----------UCACGU- -5'
11550 5' -58.6 NC_003085.1 + 18261 0.66 0.441343
Target:  5'- -cACCCaggaaacacagGGCGAcagggaagaaGCCACCgggCGGUGCAc -3'
miRNA:   3'- cuUGGGa----------CCGCU----------CGGUGGa--GUCACGU- -5'
11550 5' -58.6 NC_003085.1 + 34399 0.66 0.441343
Target:  5'- cGggUgCUGGCuGaAGCUggacGCCUCGGUGCc -3'
miRNA:   3'- -CuuGgGACCG-C-UCGG----UGGAGUCACGu -5'
11550 5' -58.6 NC_003085.1 + 20328 0.67 0.422127
Target:  5'- -cACCCUGGaugaacucUGGGCCacggcGCCUCAGcGCGg -3'
miRNA:   3'- cuUGGGACC--------GCUCGG-----UGGAGUCaCGU- -5'
11550 5' -58.6 NC_003085.1 + 23040 0.67 0.422127
Target:  5'- cGAGCagugGGCGAagcuGCCGCCggaGGUGCAg -3'
miRNA:   3'- -CUUGgga-CCGCU----CGGUGGag-UCACGU- -5'
11550 5' -58.6 NC_003085.1 + 41772 0.67 0.422127
Target:  5'- uGAAgCgUGaGCGAGCCGCC-CAGauUGCGc -3'
miRNA:   3'- -CUUgGgAC-CGCUCGGUGGaGUC--ACGU- -5'
11550 5' -58.6 NC_003085.1 + 34556 0.67 0.41271
Target:  5'- -uGCCCUGG-GAGgCGCCcCAGgGCAg -3'
miRNA:   3'- cuUGGGACCgCUCgGUGGaGUCaCGU- -5'
11550 5' -58.6 NC_003085.1 + 46002 0.67 0.41271
Target:  5'- cGGACCCgUGGCGAcucugGCUGCCUCucuggGCGc -3'
miRNA:   3'- -CUUGGG-ACCGCU-----CGGUGGAGuca--CGU- -5'
11550 5' -58.6 NC_003085.1 + 8559 0.67 0.403424
Target:  5'- ----aCUGGCGGGCCagcGCCUCGGcgGCc -3'
miRNA:   3'- cuuggGACCGCUCGG---UGGAGUCa-CGu -5'
11550 5' -58.6 NC_003085.1 + 38641 0.68 0.342259
Target:  5'- aAGCCgCUGGgGuuuGCCGCCUcCAGUGgCAc -3'
miRNA:   3'- cUUGG-GACCgCu--CGGUGGA-GUCAC-GU- -5'
11550 5' -58.6 NC_003085.1 + 19947 0.68 0.334086
Target:  5'- aGACgCUGGUGAcgGCU-CCUCAGUGCu -3'
miRNA:   3'- cUUGgGACCGCU--CGGuGGAGUCACGu -5'
11550 5' -58.6 NC_003085.1 + 41852 0.68 0.334086
Target:  5'- -cGCCC-GGCGcuGGuCCACCUCgcGGUGCGc -3'
miRNA:   3'- cuUGGGaCCGC--UC-GGUGGAG--UCACGU- -5'
11550 5' -58.6 NC_003085.1 + 3783 0.69 0.295383
Target:  5'- aGACUgUGGUGAGCCagggggGCCUCGGaGCGu -3'
miRNA:   3'- cUUGGgACCGCUCGG------UGGAGUCaCGU- -5'
11550 5' -58.6 NC_003085.1 + 30635 0.69 0.295383
Target:  5'- cGAGCCCacucaacuaccgUGGCGAGUCGCUgcggCAGgGCGc -3'
miRNA:   3'- -CUUGGG------------ACCGCUCGGUGGa---GUCaCGU- -5'
11550 5' -58.6 NC_003085.1 + 30439 0.69 0.288074
Target:  5'- uGGCCCgGGCGGGaugcuagaCGCCgCAGUGCGc -3'
miRNA:   3'- cUUGGGaCCGCUCg-------GUGGaGUCACGU- -5'
11550 5' -58.6 NC_003085.1 + 13668 0.7 0.267002
Target:  5'- -uGCCUUGGCGucauGGCgCGCCUcCGGUGCc -3'
miRNA:   3'- cuUGGGACCGC----UCG-GUGGA-GUCACGu -5'
11550 5' -58.6 NC_003085.1 + 26720 0.73 0.170372
Target:  5'- cGAAUCCcuUGGCGcguuGCCACCUCAGUuugaguccGCAg -3'
miRNA:   3'- -CUUGGG--ACCGCu---CGGUGGAGUCA--------CGU- -5'
11550 5' -58.6 NC_003085.1 + 48267 0.77 0.089588
Target:  5'- cGAAUCCaaGGUGGGCCACCUC-GUGCGc -3'
miRNA:   3'- -CUUGGGa-CCGCUCGGUGGAGuCACGU- -5'
11550 5' -58.6 NC_003085.1 + 17347 1.08 0.000405
Target:  5'- gGAACCCUGGCGAGCCACCUCAGUGCAa -3'
miRNA:   3'- -CUUGGGACCGCUCGGUGGAGUCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.