miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11555 5' -64.5 NC_003085.1 + 12407 0.66 0.270324
Target:  5'- -uGCucgaCCCGGCGGGgcCGCuGCGCuCCGAg -3'
miRNA:   3'- cuCGuc--GGGUCGCCU--GCG-CGCG-GGCU- -5'
11555 5' -64.5 NC_003085.1 + 6000 0.66 0.270324
Target:  5'- uGGCucGCCUacGGCuGGGCGCGgauguaCGCCCGGa -3'
miRNA:   3'- cUCGu-CGGG--UCG-CCUGCGC------GCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 13840 0.66 0.270324
Target:  5'- -cGCcGCCCAGggaagugcCGGAUGUgcggcaacccGCGCCCGGc -3'
miRNA:   3'- cuCGuCGGGUC--------GCCUGCG----------CGCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 22993 0.66 0.263819
Target:  5'- aAGCAG-CCAGaGGuGCGCGCGCCg-- -3'
miRNA:   3'- cUCGUCgGGUCgCC-UGCGCGCGGgcu -5'
11555 5' -64.5 NC_003085.1 + 4388 0.66 0.263819
Target:  5'- aGAGUAGacgcguUCCGGCacgcuGGGCGCGCaucuacuccgguGCCCGAc -3'
miRNA:   3'- -CUCGUC------GGGUCG-----CCUGCGCG------------CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 30328 0.66 0.263819
Target:  5'- cAGCgGGCCCuGGCGGACGCugucgcgggGCGCaCUGc -3'
miRNA:   3'- cUCG-UCGGG-UCGCCUGCG---------CGCG-GGCu -5'
11555 5' -64.5 NC_003085.1 + 19138 0.66 0.263819
Target:  5'- ---gGGCCCGGCGccugcuccGcCGCGCGCCgCGGa -3'
miRNA:   3'- cucgUCGGGUCGC--------CuGCGCGCGG-GCU- -5'
11555 5' -64.5 NC_003085.1 + 11614 0.66 0.263819
Target:  5'- -cGCAGgcCCCGGCGcucgacgaACGCGCGgCCGGu -3'
miRNA:   3'- cuCGUC--GGGUCGCc-------UGCGCGCgGGCU- -5'
11555 5' -64.5 NC_003085.1 + 10497 0.66 0.263819
Target:  5'- -cGCGGCgCAcuggagaauccGCGGAaGCGCacGCCCGAa -3'
miRNA:   3'- cuCGUCGgGU-----------CGCCUgCGCG--CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 48918 0.66 0.257441
Target:  5'- -cGCGGCCUacGGCGGguugugcuGCGCcaagGCGCUCGGc -3'
miRNA:   3'- cuCGUCGGG--UCGCC--------UGCG----CGCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 2371 0.66 0.257441
Target:  5'- aGGCAGgCCAGCGc-CGUGCuGCCgGAg -3'
miRNA:   3'- cUCGUCgGGUCGCcuGCGCG-CGGgCU- -5'
11555 5' -64.5 NC_003085.1 + 25981 0.66 0.25119
Target:  5'- aGGGCAcGCaCCGGCccaaucuucuGGAgaaGCGCGUCCGGc -3'
miRNA:   3'- -CUCGU-CG-GGUCG----------CCUg--CGCGCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 49438 0.66 0.25119
Target:  5'- uAGCAGgaCGGCGGACGgGCGgCgGGc -3'
miRNA:   3'- cUCGUCggGUCGCCUGCgCGCgGgCU- -5'
11555 5' -64.5 NC_003085.1 + 694 0.66 0.25119
Target:  5'- -cGC-GUCCGGCcucGGGCGCG-GCCUGAg -3'
miRNA:   3'- cuCGuCGGGUCG---CCUGCGCgCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 37229 0.66 0.25119
Target:  5'- uGGCGGCCCAGC---CGcCGCGCUCa- -3'
miRNA:   3'- cUCGUCGGGUCGccuGC-GCGCGGGcu -5'
11555 5' -64.5 NC_003085.1 + 3834 0.66 0.24934
Target:  5'- cGAGCAuucccgcacuGCCCAuccaggaccacggcGCGucGACgGCGCGCCCGc -3'
miRNA:   3'- -CUCGU----------CGGGU--------------CGC--CUG-CGCGCGGGCu -5'
11555 5' -64.5 NC_003085.1 + 12124 0.66 0.245065
Target:  5'- gGGGUAGCCCgcgaAGCGGcgcacgaaguCGCGCaGCaCCGGc -3'
miRNA:   3'- -CUCGUCGGG----UCGCCu---------GCGCG-CG-GGCU- -5'
11555 5' -64.5 NC_003085.1 + 19059 0.66 0.239064
Target:  5'- -cGCGGCgCgCGGCGGAgcagGCGCcggGCCCGGa -3'
miRNA:   3'- cuCGUCG-G-GUCGCCUg---CGCG---CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 13567 0.66 0.239064
Target:  5'- cGAGCaaGGCgCGcGUGGACGUGgGCaCCGGa -3'
miRNA:   3'- -CUCG--UCGgGU-CGCCUGCGCgCG-GGCU- -5'
11555 5' -64.5 NC_003085.1 + 43226 0.66 0.233769
Target:  5'- gGAGCAgGCCgAGCGGGaaccgcgcagcauggGCGCGCUCu- -3'
miRNA:   3'- -CUCGU-CGGgUCGCCUg--------------CGCGCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.