miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11555 5' -64.5 NC_003085.1 + 46727 0.66 0.233187
Target:  5'- uGGGCAGCgCCuuCGcGCGCGCugccagccGCCCGAa -3'
miRNA:   3'- -CUCGUCG-GGucGCcUGCGCG--------CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 12239 0.66 0.233187
Target:  5'- aGGCugGGCCCAuGCGGAacgaguucaUGCGCGaCCGGu -3'
miRNA:   3'- cUCG--UCGGGU-CGCCU---------GCGCGCgGGCU- -5'
11555 5' -64.5 NC_003085.1 + 47310 0.66 0.233187
Target:  5'- uGAGCAcaacGCCaUGGUGGAUGCcauccuccGCGCCCGu -3'
miRNA:   3'- -CUCGU----CGG-GUCGCCUGCG--------CGCGGGCu -5'
11555 5' -64.5 NC_003085.1 + 45854 0.66 0.233187
Target:  5'- aGGGaCGGCgCGGCGaguccuGACGcCGCGUCCGGu -3'
miRNA:   3'- -CUC-GUCGgGUCGC------CUGC-GCGCGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 41104 0.66 0.233187
Target:  5'- aAGCcGCCCAGgaGGACGCcagcgaCGCCCa- -3'
miRNA:   3'- cUCGuCGGGUCg-CCUGCGc-----GCGGGcu -5'
11555 5' -64.5 NC_003085.1 + 49022 0.66 0.233187
Target:  5'- -cGCGGgCCGGacCGGAUGCGCGCUg-- -3'
miRNA:   3'- cuCGUCgGGUC--GCCUGCGCGCGGgcu -5'
11555 5' -64.5 NC_003085.1 + 18388 0.67 0.227431
Target:  5'- cGGCuGCCCuuCGGACGgccaGCGCCgGGg -3'
miRNA:   3'- cUCGuCGGGucGCCUGCg---CGCGGgCU- -5'
11555 5' -64.5 NC_003085.1 + 48133 0.67 0.225728
Target:  5'- cAGCAGUcugggcugccuccuCCAGCGcGGCGuCGCGCUCa- -3'
miRNA:   3'- cUCGUCG--------------GGUCGC-CUGC-GCGCGGGcu -5'
11555 5' -64.5 NC_003085.1 + 5509 0.67 0.224036
Target:  5'- gGAGCGGUCauccaugaccgagcgCAGCGuGACGCGC-CCCu- -3'
miRNA:   3'- -CUCGUCGG---------------GUCGC-CUGCGCGcGGGcu -5'
11555 5' -64.5 NC_003085.1 + 3653 0.67 0.221796
Target:  5'- -cGCcGCCucggCAGCGaGGCGCGCuugcGCCCGGc -3'
miRNA:   3'- cuCGuCGG----GUCGC-CUGCGCG----CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 36817 0.67 0.221796
Target:  5'- cGGCGGCCgAGgGGAgguaGCGCauacCCCGAg -3'
miRNA:   3'- cUCGUCGGgUCgCCUg---CGCGc---GGGCU- -5'
11555 5' -64.5 NC_003085.1 + 43657 0.67 0.221796
Target:  5'- cAGCAGCCCGGgGGGCGgGguUGCagCGGa -3'
miRNA:   3'- cUCGUCGGGUCgCCUGCgC--GCGg-GCU- -5'
11555 5' -64.5 NC_003085.1 + 11283 0.67 0.216281
Target:  5'- aGAGUgGGCCCGGCuucGGAaGCGCGCgCUGGc -3'
miRNA:   3'- -CUCG-UCGGGUCG---CCUgCGCGCG-GGCU- -5'
11555 5' -64.5 NC_003085.1 + 18274 0.67 0.213029
Target:  5'- cAGCcacaGGCUCAGCGGGgGUGUggacaaugugcacuaGCCCGAc -3'
miRNA:   3'- cUCG----UCGGGUCGCCUgCGCG---------------CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 4234 0.67 0.210884
Target:  5'- uGAGCgucagccgGGCCgCAGCGcuuCGCGCGCuuGGc -3'
miRNA:   3'- -CUCG--------UCGG-GUCGCcu-GCGCGCGggCU- -5'
11555 5' -64.5 NC_003085.1 + 20389 0.67 0.205602
Target:  5'- -cGCAGCCCAcagacuucGCGGACaCGC-CCCa- -3'
miRNA:   3'- cuCGUCGGGU--------CGCCUGcGCGcGGGcu -5'
11555 5' -64.5 NC_003085.1 + 1582 0.67 0.200436
Target:  5'- -uGCGGCgCGGCGuACGCGUGCCg-- -3'
miRNA:   3'- cuCGUCGgGUCGCcUGCGCGCGGgcu -5'
11555 5' -64.5 NC_003085.1 + 9142 0.67 0.200436
Target:  5'- gGAGCGGCaCCuGGCGGAgcucgccgcCGCGCaGuCCUGAg -3'
miRNA:   3'- -CUCGUCG-GG-UCGCCU---------GCGCG-C-GGGCU- -5'
11555 5' -64.5 NC_003085.1 + 43122 0.67 0.200436
Target:  5'- -cGCAGCCguucccCAGCGGGC-CGCucgacacgGCCCGGu -3'
miRNA:   3'- cuCGUCGG------GUCGCCUGcGCG--------CGGGCU- -5'
11555 5' -64.5 NC_003085.1 + 43745 0.68 0.195383
Target:  5'- cGAGCcggguccGCCCcgguGGUGGGCGCGgGCuuGGa -3'
miRNA:   3'- -CUCGu------CGGG----UCGCCUGCGCgCGggCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.