miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11556 5' -52.1 NC_003085.1 + 38846 0.67 0.806911
Target:  5'- -gCGUCGucCCACUGCgacggcgCGCGGCGACa- -3'
miRNA:   3'- uaGCAGCu-GGUGAUG-------GCGUUGUUGcc -5'
11556 5' -52.1 NC_003085.1 + 22760 0.67 0.798086
Target:  5'- -gCGcCGACgACgcccGCCGCGgugGCGACGGc -3'
miRNA:   3'- uaGCaGCUGgUGa---UGGCGU---UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 20930 0.67 0.788109
Target:  5'- --gGUgGGCgGC-ACCGCAGCGGCGa -3'
miRNA:   3'- uagCAgCUGgUGaUGGCGUUGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 12865 0.67 0.788109
Target:  5'- -gCGUgGAgCAcCUGCC-CGACAACGGc -3'
miRNA:   3'- uaGCAgCUgGU-GAUGGcGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 7859 0.67 0.788109
Target:  5'- -cUGUUgGGCCGCgaaugcgcucGCCGCGACGAUGGc -3'
miRNA:   3'- uaGCAG-CUGGUGa---------UGGCGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 22793 0.67 0.788109
Target:  5'- -gCGgcaaCGGCCGCUcCCGCccaggaGGCGACGGc -3'
miRNA:   3'- uaGCa---GCUGGUGAuGGCG------UUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 25221 0.68 0.777961
Target:  5'- gGUCGcCGGCCAC-ACCGCGcuuCGugGu -3'
miRNA:   3'- -UAGCaGCUGGUGaUGGCGUu--GUugCc -5'
11556 5' -52.1 NC_003085.1 + 7010 0.68 0.777961
Target:  5'- --aGUCGACCGCccaGCCGCccgggauGCggUGGa -3'
miRNA:   3'- uagCAGCUGGUGa--UGGCGu------UGuuGCC- -5'
11556 5' -52.1 NC_003085.1 + 22606 0.68 0.777961
Target:  5'- -cCGUUGGCCuGCaugUACCGCGGCGcuucguGCGGc -3'
miRNA:   3'- uaGCAGCUGG-UG---AUGGCGUUGU------UGCC- -5'
11556 5' -52.1 NC_003085.1 + 44367 0.68 0.767656
Target:  5'- cUCG-CGGCgAUUGCUGCu-CGACGGg -3'
miRNA:   3'- uAGCaGCUGgUGAUGGCGuuGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 12071 0.68 0.757204
Target:  5'- -gCGUCaGGCCGCUGCUGCcGCAGg-- -3'
miRNA:   3'- uaGCAG-CUGGUGAUGGCGuUGUUgcc -5'
11556 5' -52.1 NC_003085.1 + 41547 0.68 0.757204
Target:  5'- -aCGUCuGCUGCcGCCGCGGCGgcagucGCGGg -3'
miRNA:   3'- uaGCAGcUGGUGaUGGCGUUGU------UGCC- -5'
11556 5' -52.1 NC_003085.1 + 31733 0.68 0.757204
Target:  5'- --aGUcCGACCAauCUGCCGCcgAGCAGuCGGg -3'
miRNA:   3'- uagCA-GCUGGU--GAUGGCG--UUGUU-GCC- -5'
11556 5' -52.1 NC_003085.1 + 43661 0.68 0.746619
Target:  5'- -gCGccugCGACCuCUGCCGUGGCGcCGGg -3'
miRNA:   3'- uaGCa---GCUGGuGAUGGCGUUGUuGCC- -5'
11556 5' -52.1 NC_003085.1 + 38246 0.68 0.735912
Target:  5'- cGUCGgcggUGGCCACcuacuuCCGCGcgacgACGACGGa -3'
miRNA:   3'- -UAGCa---GCUGGUGau----GGCGU-----UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 3725 0.68 0.735912
Target:  5'- cUCGUCGuGCCACUccgucugccACCgaGCAuCGACGGu -3'
miRNA:   3'- uAGCAGC-UGGUGA---------UGG--CGUuGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 42643 0.69 0.724009
Target:  5'- cGUCGUCGcgccaccuccauaGCCACUgcACCGCcgu-GCGGg -3'
miRNA:   3'- -UAGCAGC-------------UGGUGA--UGGCGuuguUGCC- -5'
11556 5' -52.1 NC_003085.1 + 44085 0.69 0.714183
Target:  5'- uUCGcCGuCCAUcGCCGCGGCcagccGACGGa -3'
miRNA:   3'- uAGCaGCuGGUGaUGGCGUUG-----UUGCC- -5'
11556 5' -52.1 NC_003085.1 + 14487 0.69 0.714183
Target:  5'- -aCGUCGACCGCauCCGCAagaaguACAACc- -3'
miRNA:   3'- uaGCAGCUGGUGauGGCGU------UGUUGcc -5'
11556 5' -52.1 NC_003085.1 + 48765 0.69 0.692115
Target:  5'- --aGUCcGCCAC-GCCGC-GCAACGGu -3'
miRNA:   3'- uagCAGcUGGUGaUGGCGuUGUUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.