miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11557 3' -61.1 NC_003085.1 + 22293 0.66 0.416951
Target:  5'- gGCCGCACagaagaACcucaucagccaggcuGCCCGCGCCAuGAa- -3'
miRNA:   3'- aCGGCGUGc-----UG---------------CGGGCGCGGUuCUgc -5'
11557 3' -61.1 NC_003085.1 + 8940 0.66 0.41332
Target:  5'- gUGCaGCGCGugGCCaaccuGCGCUggGcCa -3'
miRNA:   3'- -ACGgCGUGCugCGGg----CGCGGuuCuGc -5'
11557 3' -61.1 NC_003085.1 + 10317 0.66 0.41332
Target:  5'- gGUgGCACGGCgauGCCaauGCGCCAccugcGACGa -3'
miRNA:   3'- aCGgCGUGCUG---CGGg--CGCGGUu----CUGC- -5'
11557 3' -61.1 NC_003085.1 + 18846 0.66 0.41332
Target:  5'- aGCCGCcuuCGcuuuguccauCGCCCGCuCCAGcGGCGg -3'
miRNA:   3'- aCGGCGu--GCu---------GCGGGCGcGGUU-CUGC- -5'
11557 3' -61.1 NC_003085.1 + 32928 0.66 0.41332
Target:  5'- aUGCgGCACGGCGaCCG-GCuCAacAGGCGc -3'
miRNA:   3'- -ACGgCGUGCUGCgGGCgCG-GU--UCUGC- -5'
11557 3' -61.1 NC_003085.1 + 4140 0.66 0.412415
Target:  5'- cGCCGCucuacggaGCGACuGCUgGCGCaacuccgCGAGACa -3'
miRNA:   3'- aCGGCG--------UGCUG-CGGgCGCG-------GUUCUGc -5'
11557 3' -61.1 NC_003085.1 + 27729 0.66 0.412415
Target:  5'- cGCCGUagucgguggcgauGCGGCGUCC-CGCUGGcGGCGa -3'
miRNA:   3'- aCGGCG-------------UGCUGCGGGcGCGGUU-CUGC- -5'
11557 3' -61.1 NC_003085.1 + 4190 0.66 0.412415
Target:  5'- cGCUggagucccaGCGCGGCGCCCaacuccaGCGgCGAGuGCGg -3'
miRNA:   3'- aCGG---------CGUGCUGCGGG-------CGCgGUUC-UGC- -5'
11557 3' -61.1 NC_003085.1 + 19121 0.66 0.409708
Target:  5'- cGCCGCGCGcCGCggaaucuccacgaCGCaGCCAgaGGACu -3'
miRNA:   3'- aCGGCGUGCuGCGg------------GCG-CGGU--UCUGc -5'
11557 3' -61.1 NC_003085.1 + 6727 0.66 0.405221
Target:  5'- aUGCCGCcgaugaccgauggucCGACuGCCCggccugccGCGCCGuggcGGACGg -3'
miRNA:   3'- -ACGGCGu--------------GCUG-CGGG--------CGCGGU----UCUGC- -5'
11557 3' -61.1 NC_003085.1 + 31885 0.66 0.404327
Target:  5'- aGCuCGUccGCGAUGCCgUGCGgaaCGAGGCGg -3'
miRNA:   3'- aCG-GCG--UGCUGCGG-GCGCg--GUUCUGC- -5'
11557 3' -61.1 NC_003085.1 + 19538 0.66 0.404327
Target:  5'- aGCgGaCGCG-CGCCCGaCGCgGAGAa- -3'
miRNA:   3'- aCGgC-GUGCuGCGGGC-GCGgUUCUgc -5'
11557 3' -61.1 NC_003085.1 + 41546 0.66 0.404327
Target:  5'- cGCUgGCGCGguacuucacccGCGCCCcagccuugcGCGCCAAcucGACGg -3'
miRNA:   3'- aCGG-CGUGC-----------UGCGGG---------CGCGGUU---CUGC- -5'
11557 3' -61.1 NC_003085.1 + 4012 0.66 0.404327
Target:  5'- gGCCGCgacaacaucgccGCGGCGCUCG-GCUuccaguucGAGGCGu -3'
miRNA:   3'- aCGGCG------------UGCUGCGGGCgCGG--------UUCUGC- -5'
11557 3' -61.1 NC_003085.1 + 29224 0.66 0.404327
Target:  5'- -aCCGCgACGuCGCCUGCGaguAGGCGg -3'
miRNA:   3'- acGGCG-UGCuGCGGGCGCgguUCUGC- -5'
11557 3' -61.1 NC_003085.1 + 29637 0.66 0.404327
Target:  5'- gGCCGCcgaaGACGUCCGCGUu--GGCc -3'
miRNA:   3'- aCGGCGug--CUGCGGGCGCGguuCUGc -5'
11557 3' -61.1 NC_003085.1 + 20101 0.66 0.404327
Target:  5'- gUGCCGCAgGugGCggggcuggaguCCG-GCCuaGAGGCGc -3'
miRNA:   3'- -ACGGCGUgCugCG-----------GGCgCGG--UUCUGC- -5'
11557 3' -61.1 NC_003085.1 + 5633 0.66 0.39546
Target:  5'- gGCUGCugGAgCGCUCGC-CCuguGACu -3'
miRNA:   3'- aCGGCGugCU-GCGGGCGcGGuu-CUGc -5'
11557 3' -61.1 NC_003085.1 + 17933 0.66 0.39546
Target:  5'- cGCCcaGCGCGGCGCuCUGgGCUcugcuGGGGCa -3'
miRNA:   3'- aCGG--CGUGCUGCG-GGCgCGG-----UUCUGc -5'
11557 3' -61.1 NC_003085.1 + 14156 0.66 0.39546
Target:  5'- -cCCGUACGGagUGCCUGCGCgAuGACa -3'
miRNA:   3'- acGGCGUGCU--GCGGGCGCGgUuCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.