miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11558 3' -58.8 NC_003085.1 + 27781 0.66 0.471689
Target:  5'- aCGAGGCgCGacagcGGGCgGacGCCCAgACGCGa -3'
miRNA:   3'- -GCUUCGgGU-----UCCGgCa-CGGGU-UGCGC- -5'
11558 3' -58.8 NC_003085.1 + 43196 0.66 0.471689
Target:  5'- gGgcGCgcucuacgCCAAGGCUGUuCCCGGCGUGc -3'
miRNA:   3'- gCuuCG--------GGUUCCGGCAcGGGUUGCGC- -5'
11558 3' -58.8 NC_003085.1 + 23788 0.66 0.470697
Target:  5'- uGggGgCCGGGGCCGUcuugacggaggagGCUgcuGCGCGg -3'
miRNA:   3'- gCuuCgGGUUCCGGCA-------------CGGgu-UGCGC- -5'
11558 3' -58.8 NC_003085.1 + 41332 0.66 0.467725
Target:  5'- cCGAAGCCCGGGGacuuggccuucuaCGgcagGCCgGGcCGCGu -3'
miRNA:   3'- -GCUUCGGGUUCCg------------GCa---CGGgUU-GCGC- -5'
11558 3' -58.8 NC_003085.1 + 24391 0.67 0.461812
Target:  5'- --uGGCCUggacGGGGCCGUGCCgGugGa- -3'
miRNA:   3'- gcuUCGGG----UUCCGGCACGGgUugCgc -5'
11558 3' -58.8 NC_003085.1 + 15180 0.67 0.452044
Target:  5'- uGAcGGCCCGgcuGaGCCgGUGCgCCAGCGCc -3'
miRNA:   3'- gCU-UCGGGUu--C-CGG-CACG-GGUUGCGc -5'
11558 3' -58.8 NC_003085.1 + 44337 0.67 0.44239
Target:  5'- -cAAGCCaggcAGGCCGaGUCCgAGCGCGa -3'
miRNA:   3'- gcUUCGGgu--UCCGGCaCGGG-UUGCGC- -5'
11558 3' -58.8 NC_003085.1 + 4010 0.67 0.432854
Target:  5'- aGuGGCCCAAGGCagaguuggugGUGCCgugaCGACGCc -3'
miRNA:   3'- gCuUCGGGUUCCGg---------CACGG----GUUGCGc -5'
11558 3' -58.8 NC_003085.1 + 47047 0.67 0.42719
Target:  5'- gCGAAacGCUCAAGGCguggcugacggacggUGUGCCCGcgucggccccuGCGCGc -3'
miRNA:   3'- -GCUU--CGGGUUCCG---------------GCACGGGU-----------UGCGC- -5'
11558 3' -58.8 NC_003085.1 + 31525 0.67 0.423439
Target:  5'- cCGAcGGCgCGAGGCCGUacguGCCauccguguagaCGACGCGc -3'
miRNA:   3'- -GCU-UCGgGUUCCGGCA----CGG-----------GUUGCGC- -5'
11558 3' -58.8 NC_003085.1 + 36110 0.67 0.414147
Target:  5'- gGAAGaCgGGGGCauacggCGUGCCCAugGCc -3'
miRNA:   3'- gCUUCgGgUUCCG------GCACGGGUugCGc -5'
11558 3' -58.8 NC_003085.1 + 40800 0.67 0.414147
Target:  5'- cCGgcGCCCAAGGCCacgcgcGU-CCCGGC-CGg -3'
miRNA:   3'- -GCuuCGGGUUCCGG------CAcGGGUUGcGC- -5'
11558 3' -58.8 NC_003085.1 + 41118 0.68 0.404982
Target:  5'- gGAGGCCC-AGGCCGaGCgCGGCa-- -3'
miRNA:   3'- gCUUCGGGuUCCGGCaCGgGUUGcgc -5'
11558 3' -58.8 NC_003085.1 + 18005 0.68 0.404982
Target:  5'- -aGAGCCCAgAGcGCCGcGCUgGGCGCa -3'
miRNA:   3'- gcUUCGGGU-UC-CGGCaCGGgUUGCGc -5'
11558 3' -58.8 NC_003085.1 + 15049 0.68 0.404982
Target:  5'- cCGcAGCCCAGGGCCaaaGCCU--CGUGg -3'
miRNA:   3'- -GCuUCGGGUUCCGGca-CGGGuuGCGC- -5'
11558 3' -58.8 NC_003085.1 + 31323 0.68 0.399545
Target:  5'- cCGAAGCCuCAGcagacgucccaggccGGCCGUcccGCCC-GCGCc -3'
miRNA:   3'- -GCUUCGG-GUU---------------CCGGCA---CGGGuUGCGc -5'
11558 3' -58.8 NC_003085.1 + 25873 0.68 0.395946
Target:  5'- uCGAGcaaCUCGccGCCGUGCCgGACGCGc -3'
miRNA:   3'- -GCUUc--GGGUucCGGCACGGgUUGCGC- -5'
11558 3' -58.8 NC_003085.1 + 13037 0.68 0.395946
Target:  5'- aCGGAGCucugCCGGGGCCuu-CCgGACGCGg -3'
miRNA:   3'- -GCUUCG----GGUUCCGGcacGGgUUGCGC- -5'
11558 3' -58.8 NC_003085.1 + 41826 0.68 0.387041
Target:  5'- gCGccGCCCAAGcGCCccaugaGUcccGCCCGGCGCu -3'
miRNA:   3'- -GCuuCGGGUUC-CGG------CA---CGGGUUGCGc -5'
11558 3' -58.8 NC_003085.1 + 13550 0.68 0.387041
Target:  5'- cCGAGGUCC-AGGUCGaGCCgCGcCGCGa -3'
miRNA:   3'- -GCUUCGGGuUCCGGCaCGG-GUuGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.