Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11559 | 3' | -59.3 | NC_003085.1 | + | 2174 | 0.68 | 0.313355 |
Target: 5'- gGCGCcGAUGGC--GCCgagGUGCGGCg- -3' miRNA: 3'- -UGCGuCUACCGguCGGa--CAUGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 15343 | 0.69 | 0.29827 |
Target: 5'- gGCGCGGcgGGUgAGCUcGgccGCGGCCu -3' miRNA: 3'- -UGCGUCuaCCGgUCGGaCa--UGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 22381 | 0.69 | 0.290941 |
Target: 5'- gGCGCGGGcagccUGGCUgaugaGGUucuuCUGUGCGGCCu -3' miRNA: 3'- -UGCGUCU-----ACCGG-----UCG----GACAUGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23403 | 0.69 | 0.283754 |
Target: 5'- gGCGCu--UGGCCGGCCaGaGCGGCg- -3' miRNA: 3'- -UGCGucuACCGGUCGGaCaUGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 10544 | 0.69 | 0.283754 |
Target: 5'- -aGCAGGUcGGCCAGCCgagGgGcGCCAa -3' miRNA: 3'- ugCGUCUA-CCGGUCGGacaUgC-CGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 48277 | 0.69 | 0.276708 |
Target: 5'- -gGCAGGUGGCCgaauccaaggugGGCCaccucGUGCGcGCCGa -3' miRNA: 3'- ugCGUCUACCGG------------UCGGa----CAUGC-CGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 9757 | 0.69 | 0.276708 |
Target: 5'- cUGCAGGgacGCCAGCCgGUgcucgacguugGCGGCCGu -3' miRNA: 3'- uGCGUCUac-CGGUCGGaCA-----------UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 35896 | 0.69 | 0.269802 |
Target: 5'- cCGCGGAgucccagGGCCAuGCC---ACGGCCAg -3' miRNA: 3'- uGCGUCUa------CCGGU-CGGacaUGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 454 | 0.69 | 0.263036 |
Target: 5'- gGCGCGGAgGGCCAGCCggcgcUGUugcaggugcccACGGgCGa -3' miRNA: 3'- -UGCGUCUaCCGGUCGG-----ACA-----------UGCCgGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 26219 | 0.7 | 0.249918 |
Target: 5'- gACGUcGGUGGCCAGCagcccgaGUuccACGGCCGc -3' miRNA: 3'- -UGCGuCUACCGGUCGga-----CA---UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 38315 | 0.7 | 0.249918 |
Target: 5'- -aGUAGGUGGCCAccGCCgacGUGCuGCCGu -3' miRNA: 3'- ugCGUCUACCGGU--CGGa--CAUGcCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 5234 | 0.7 | 0.249918 |
Target: 5'- cGCGCcaGGAUGGCCGcuGCCUucgcGU-CGGCCu -3' miRNA: 3'- -UGCG--UCUACCGGU--CGGA----CAuGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23214 | 0.71 | 0.208222 |
Target: 5'- -gGCAG-UGGCCGGgCUGcuccagACGGCCGc -3' miRNA: 3'- ugCGUCuACCGGUCgGACa-----UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 25152 | 0.71 | 0.202781 |
Target: 5'- aGCGCGGuGUGGCCggcgaccguGGCCUGgugGCGGUg- -3' miRNA: 3'- -UGCGUC-UACCGG---------UCGGACa--UGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 20104 | 0.72 | 0.168058 |
Target: 5'- cCGCAGGUGGCgGGgCUGgagucCGGCCu -3' miRNA: 3'- uGCGUCUACCGgUCgGACau---GCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 34626 | 0.73 | 0.163112 |
Target: 5'- gGCGCAcGcgGGCCGGCUgGUggcgcucGCGGCCGc -3' miRNA: 3'- -UGCGU-CuaCCGGUCGGaCA-------UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 48966 | 0.73 | 0.154876 |
Target: 5'- gGCGCGGcUGGCgGGCCaaugcuccgUGUGCGGCg- -3' miRNA: 3'- -UGCGUCuACCGgUCGG---------ACAUGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 38277 | 0.74 | 0.124193 |
Target: 5'- gACGaCGGAUGGCgCGagcucgggcuuuGCCUGUgACGGCCAg -3' miRNA: 3'- -UGC-GUCUACCG-GU------------CGGACA-UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 1386 | 0.74 | 0.124193 |
Target: 5'- uCGCAGu--GCCAGCCUucGCGGCCAc -3' miRNA: 3'- uGCGUCuacCGGUCGGAcaUGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 40816 | 0.77 | 0.081346 |
Target: 5'- cGCGCGucccGGCCGGCCUGUaccugacgGCGGCCGg -3' miRNA: 3'- -UGCGUcua-CCGGUCGGACA--------UGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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