Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11559 | 5' | -58.9 | NC_003085.1 | + | 14702 | 0.68 | 0.408685 |
Target: 5'- aGGUGGGCGUCacacAGCCcaugaGCUUcgaCGCGGc -3' miRNA: 3'- -CCACUCGCAG----UCGGccg--CGAA---GCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 6642 | 0.68 | 0.408685 |
Target: 5'- cGUGAGCG-CAagguGCUGGCGUcccaacUCGUGGa -3' miRNA: 3'- cCACUCGCaGU----CGGCCGCGa-----AGCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 39486 | 0.68 | 0.407782 |
Target: 5'- cGUGcGCGUCgaggcgcucgagaAGCCGGUGCgccucgUCGCuGGc -3' miRNA: 3'- cCACuCGCAG-------------UCGGCCGCGa-----AGCG-CC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 36048 | 0.68 | 0.390858 |
Target: 5'- -cUGGGCGUCGGCCuGGCcccCUaCGCGa -3' miRNA: 3'- ccACUCGCAGUCGG-CCGc--GAaGCGCc -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 11625 | 0.68 | 0.390858 |
Target: 5'- cGGUGcguuGGCG-CAGgccCCGGCGCUcgacgaacgCGCGGc -3' miRNA: 3'- -CCAC----UCGCaGUC---GGCCGCGAa--------GCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 10783 | 0.68 | 0.382137 |
Target: 5'- -uUGc-CGUCAGCCaGUGCcUCGCGGg -3' miRNA: 3'- ccACucGCAGUCGGcCGCGaAGCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 8572 | 0.68 | 0.382137 |
Target: 5'- uGGUGcGCGUCguacuggcgGGCCaGCGCcUCgGCGGc -3' miRNA: 3'- -CCACuCGCAG---------UCGGcCGCGaAG-CGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 20931 | 0.69 | 0.373546 |
Target: 5'- gGGUGGGCGgcaccgCAGCggcgagcuCGGCGCcggUCGCc- -3' miRNA: 3'- -CCACUCGCa-----GUCG--------GCCGCGa--AGCGcc -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 3083 | 0.69 | 0.356762 |
Target: 5'- -cUGGGCGUCGuCCGuGCGCccaGCGGg -3' miRNA: 3'- ccACUCGCAGUcGGC-CGCGaagCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 34811 | 0.69 | 0.356762 |
Target: 5'- aGUGGGCGggAGCCuucGGCGCUgaccgagCGCGu -3' miRNA: 3'- cCACUCGCagUCGG---CCGCGAa------GCGCc -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 42731 | 0.69 | 0.355937 |
Target: 5'- cGUGGGCGUCGgggcgauGCgGGCGCg--GUGGa -3' miRNA: 3'- cCACUCGCAGU-------CGgCCGCGaagCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 23321 | 0.69 | 0.348571 |
Target: 5'- uGUGcGCGggCGGCgCGGUGCgaagCGCGGc -3' miRNA: 3'- cCACuCGCa-GUCG-GCCGCGaa--GCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 32157 | 0.69 | 0.348571 |
Target: 5'- cGGUGgguuacGGCGUCGGCCaGGCuGCgccaGUGGu -3' miRNA: 3'- -CCAC------UCGCAGUCGG-CCG-CGaag-CGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 48779 | 0.7 | 0.32481 |
Target: 5'- cGUG-GCGaCuGgCGGCGCUucuUCGCGGg -3' miRNA: 3'- cCACuCGCaGuCgGCCGCGA---AGCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 48743 | 0.7 | 0.309651 |
Target: 5'- cGUGAGCGgCGcGUCaGGCGCcaCGCGGa -3' miRNA: 3'- cCACUCGCaGU-CGG-CCGCGaaGCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 29097 | 0.7 | 0.309651 |
Target: 5'- gGGUugcccGGCGUCAGCagCGGCGaCgcggCGCGGa -3' miRNA: 3'- -CCAc----UCGCAGUCG--GCCGC-Gaa--GCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 12188 | 0.7 | 0.302275 |
Target: 5'- aGGUGGGCGaC-GUCGaGCGCUUCcCGGc -3' miRNA: 3'- -CCACUCGCaGuCGGC-CGCGAAGcGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 25386 | 0.7 | 0.287933 |
Target: 5'- cGGUGgccaccacGGCGUCguccaccuGGCCGGC-CgUCGCGGu -3' miRNA: 3'- -CCAC--------UCGCAG--------UCGGCCGcGaAGCGCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 22826 | 0.71 | 0.280964 |
Target: 5'- cGGcGGGCGUC-GUCGGCGCgggUGuCGGa -3' miRNA: 3'- -CCaCUCGCAGuCGGCCGCGaa-GC-GCC- -5' |
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11559 | 5' | -58.9 | NC_003085.1 | + | 24699 | 0.71 | 0.280964 |
Target: 5'- uGGUGcuGGaCGgCGGCauCGGCgGCUUCGCGGg -3' miRNA: 3'- -CCAC--UC-GCaGUCG--GCCG-CGAAGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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